RNA–Protein interactions for RNA: ENST00000241704.7

COPA-201, Transcript of coatomer protein complex subunit alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPA, Length 4,789 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-201ENST00000241704 ARAP3Q8WWN8 1544 aa13□□□□□ -0.33
COPA-201ENST00000241704 USP19O94966 1318 aa13□□□□□ -0.33
COPA-201ENST00000241704 VGLL3A8MV65 326 aa13□□□□□ -0.33
COPA-201ENST00000241704 NOLC1Q14978 699 aaKnown RBP eCLIP13□□□□□ -0.332e-11■■■■□ 20.1
COPA-201ENST00000241704 ZSCAN21Q9Y5A6 473 aaPredicted RBP13□□□□□ -0.33
COPA-201ENST00000241704 VPS37CA5D8V6 355 aaPredicted RBP13□□□□□ -0.33
COPA-201ENST00000241704 PHACTR3Q96KR7 559 aa13□□□□□ -0.33
COPA-201ENST00000241704 ZMYM4Q5VZL5 1548 aa13□□□□□ -0.33
COPA-201ENST00000241704 CDC42BPAQ5VT25 1732 aa13□□□□□ -0.33
COPA-201ENST00000241704 ZNF445P59923 1031 aa13□□□□□ -0.33
COPA-201ENST00000241704 GPS2Q13227 327 aa13□□□□□ -0.33
COPA-201ENST00000241704 LRRC59Q96AG4 307 aaKnown RBP13□□□□□ -0.33
COPA-201ENST00000241704 CCDC43Q96MW1 224 aaKnown RBP13□□□□□ -0.33
COPA-201ENST00000241704 ERICH4A6NGS2 130 aa12.99□□□□□ -0.33
COPA-201ENST00000241704 PRIM1P49642 420 aaKnown RBP12.99□□□□□ -0.33
COPA-201ENST00000241704 MAP3K19Q56UN5 1328 aa12.99□□□□□ -0.33
COPA-201ENST00000241704 AK7Q96M32 723 aa12.99□□□□□ -0.33
COPA-201ENST00000241704 SLC3A2P08195 630 aaKnown RBP12.99□□□□□ -0.33
COPA-201ENST00000241704 IRX3P78415 501 aaPredicted RBP12.99□□□□□ -0.33
COPA-201ENST00000241704 FEZ1Q99689 392 aa12.99□□□□□ -0.33
COPA-201ENST00000241704 PLA2R1Q13018 1463 aa12.98□□□□□ -0.33
COPA-201ENST00000241704 IGSF3O75054 1194 aa12.98□□□□□ -0.33
COPA-201ENST00000241704 SART3Q15020 963 aaKnown RBP12.98□□□□□ -0.33
COPA-201ENST00000241704 MTHFSDQ2M296 383 aaKnown RBP12.98□□□□□ -0.33
COPA-201ENST00000241704 C8orf58Q8NAV2 365 aa12.98□□□□□ -0.33
COPA-201ENST00000241704 CCDC112Q8NEF3 446 aa12.98□□□□□ -0.33
COPA-201ENST00000241704 MX1P20591 662 aa12.98□□□□□ -0.33
COPA-201ENST00000241704 EYA1Q99502 592 aa12.98□□□□□ -0.33
COPA-201ENST00000241704 RBSNQ9H1K0 784 aa12.98□□□□□ -0.33
COPA-201ENST00000241704 PCDHB15Q9Y5E8 787 aa12.98□□□□□ -0.33
COPA-201ENST00000241704 LRRFIP2Q9Y608 721 aaKnown RBP12.98□□□□□ -0.33
COPA-201ENST00000241704 MYOM2P54296 1465 aa12.98□□□□□ -0.33
COPA-201ENST00000241704 PIK3R4Q99570 1358 aa12.98□□□□□ -0.33
COPA-201ENST00000241704 KAT6BQ8WYB5 2073 aa12.98□□□□□ -0.33
COPA-201ENST00000241704 BLMP54132 1417 aaPredicted RBP12.98□□□□□ -0.33
COPA-201ENST00000241704 GCP02774 474 aa12.97□□□□□ -0.33
COPA-201ENST00000241704 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.97□□□□□ -0.335e-8■■■■□ 20.3
COPA-201ENST00000241704 LTKP29376 864 aa12.97□□□□□ -0.33
COPA-201ENST00000241704 AKAP4Q5JQC9 854 aa12.97□□□□□ -0.33
COPA-201ENST00000241704 CABLES1Q8TDN4 633 aa12.97□□□□□ -0.33
COPA-201ENST00000241704 MYD88Q99836 296 aa12.97□□□□□ -0.33
COPA-201ENST00000241704 HDAC1Q13547 482 aaPredicted RBP12.97□□□□□ -0.33
COPA-201ENST00000241704 SAFBQ15424 915 aaKnown RBP eCLIP12.97□□□□□ -0.33
COPA-201ENST00000241704 MRPL50Q8N5N7 158 aaKnown RBP12.97□□□□□ -0.33
COPA-201ENST00000241704 RBM27Q9P2N5 1060 aaKnown RBP12.97□□□□□ -0.33
COPA-201ENST00000241704 SMARCA5O60264 1052 aaPredicted RBP12.97□□□□□ -0.33
COPA-201ENST00000241704 MAP4K4O95819 1239 aaPredicted RBP12.97□□□□□ -0.33
COPA-201ENST00000241704 PLXNC1O60486 1568 aa12.97□□□□□ -0.33
COPA-201ENST00000241704 PLEKHG3A1L390 1219 aa12.96□□□□□ -0.33
COPA-201ENST00000241704 VAMP4O75379 141 aa12.96□□□□□ -0.33
COPA-201ENST00000241704 GLRX3O76003 335 aaKnown RBP12.96□□□□□ -0.33
COPA-201ENST00000241704 ATP2B2Q01814 1243 aa12.96□□□□□ -0.33
COPA-201ENST00000241704 NUTM1Q86Y26 1132 aa12.96□□□□□ -0.33
COPA-201ENST00000241704 OGFRQ9NZT2 677 aa12.96□□□□□ -0.33
COPA-201ENST00000241704 HECW2Q9P2P5 1572 aa12.96□□□□□ -0.33
COPA-201ENST00000241704 IL13P35225 146 aa12.96□□□□□ -0.33
COPA-201ENST00000241704 RRP12Q5JTH9 1297 aaKnown RBP12.96□□□□□ -0.33
COPA-201ENST00000241704 ZSCAN29Q8IWY8 852 aaPredicted RBP12.96□□□□□ -0.33
COPA-201ENST00000241704 PI4KAP2A4QPH2 592 aa12.96□□□□□ -0.34
COPA-201ENST00000241704 PES1O00541 588 aaKnown RBP12.96□□□□□ -0.34
COPA-201ENST00000241704 DDB1Q16531 1140 aa12.96□□□□□ -0.34
COPA-201ENST00000241704 PI4KAP1Q8N8J0 262 aa12.96□□□□□ -0.34
COPA-201ENST00000241704 CWC15Q9P013 229 aaKnown RBP12.96□□□□□ -0.34
COPA-201ENST00000241704 HOXC9P31274 260 aa12.96□□□□□ -0.34
COPA-201ENST00000241704 HSP90AB3PQ58FF7 597 aa12.96□□□□□ -0.34
COPA-201ENST00000241704 IP6K1Q92551 441 aa12.96□□□□□ -0.34
COPA-201ENST00000241704 NOM1Q5C9Z4 860 aaKnown RBP12.95□□□□□ -0.34
COPA-201ENST00000241704 SPINK5Q9NQ38 1064 aaPredicted RBP12.95□□□□□ -0.34
COPA-201ENST00000241704 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.95□□□□□ -0.343e-7■■■■□ 22.6
COPA-201ENST00000241704 TPD52L1Q16890 204 aaPredicted RBP12.95□□□□□ -0.34
COPA-201ENST00000241704 TEX13AQ9BXU3 409 aaPredicted RBP12.95□□□□□ -0.34
COPA-201ENST00000241704 KDM5CP41229 1560 aa12.95□□□□□ -0.34
COPA-201ENST00000241704 UGGT1Q9NYU2 1555 aa12.95□□□□□ -0.34
COPA-201ENST00000241704 TMOD2Q9NZR1 351 aa12.95□□□□□ -0.34
COPA-201ENST00000241704 CYP46A1Q9Y6A2 500 aa12.95□□□□□ -0.34
COPA-201ENST00000241704 SNRPA1P09661 255 aaKnown RBP12.94□□□□□ -0.34
COPA-201ENST00000241704 NACAP1Q9BZK3 213 aa12.94□□□□□ -0.34
COPA-201ENST00000241704 TRMT112Q9UI30 125 aaKnown RBP12.94□□□□□ -0.34
COPA-201ENST00000241704 FKBP4Q02790 459 aaKnown RBP eCLIP12.94□□□□□ -0.34
COPA-201ENST00000241704 SPC24Q8NBT2 197 aa12.94□□□□□ -0.34
COPA-201ENST00000241704 PDCP20941 246 aa12.94□□□□□ -0.34
COPA-201ENST00000241704 GABPB1Q06547 395 aaPredicted RBP12.94□□□□□ -0.34
COPA-201ENST00000241704 UVSSAQ2YD98 709 aa12.94□□□□□ -0.34
COPA-201ENST00000241704 MAP3K2Q9Y2U5 619 aa12.94□□□□□ -0.34
COPA-201ENST00000241704 PAXIP1Q6ZW49 1069 aaPredicted RBP12.94□□□□□ -0.34
COPA-201ENST00000241704 ZCRB1Q8TBF4 217 aaKnown RBP12.94□□□□□ -0.34
COPA-201ENST00000241704 PRDM15P57071 1507 aaPredicted RBP12.93□□□□□ -0.34
COPA-201ENST00000241704 CWC27Q6UX04 472 aaKnown RBP12.93□□□□□ -0.34
COPA-201ENST00000241704 USP25Q9UHP3 1055 aa12.93□□□□□ -0.34
COPA-201ENST00000241704 ARGLU1Q9NWB6 273 aaPredicted RBP12.93□□□□□ -0.34
COPA-201ENST00000241704 ZNF219Q9P2Y4 722 aaPredicted RBP12.93□□□□□ -0.34
COPA-201ENST00000241704 SBNO1A3KN83 1393 aa12.93□□□□□ -0.34
COPA-201ENST00000241704 IBTKQ9P2D0 1353 aaPredicted RBP12.93□□□□□ -0.34
COPA-201ENST00000241704 BMP2KLQ5H9B9 411 aa12.93□□□□□ -0.34
COPA-201ENST00000241704 TSPYL6Q8N831 410 aa12.93□□□□□ -0.34
COPA-201ENST00000241704 RAI14Q9P0K7 980 aa12.93□□□□□ -0.34
COPA-201ENST00000241704 RFC4P35249 363 aa12.93□□□□□ -0.34
COPA-201ENST00000241704 METTL24Q5JXM2 366 aa12.93□□□□□ -0.34
COPA-201ENST00000241704 BICD2Q8TD16 824 aa12.93□□□□□ -0.34
COPA-201ENST00000241704 RPGRQ92834 1020 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms