RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 DNAJC10Q8IXB1 793 aa11.06□□□□□ -0.64
VPS4B-201ENST00000238497 RIPK4P57078 832 aa11.05□□□□□ -0.64
VPS4B-201ENST00000238497 DCTN1Q14203 1278 aa11.05□□□□□ -0.64
VPS4B-201ENST00000238497 SLC4A9Q96Q91 983 aa11.05□□□□□ -0.64
VPS4B-201ENST00000238497 MCM10Q7L590 875 aa11.04□□□□□ -0.64
VPS4B-201ENST00000238497 ZBTB47Q9UFB7 747 aaPredicted RBP11.04□□□□□ -0.64
VPS4B-201ENST00000238497 SHANK3Q9BYB0 1731 aa11.04□□□□□ -0.64
VPS4B-201ENST00000238497 FTSJ3Q8IY81 847 aaKnown RBP11.04□□□□□ -0.64
VPS4B-201ENST00000238497 DAXXQ9UER7 740 aaPredicted RBP11.04□□□□□ -0.64
VPS4B-201ENST00000238497 YY1P25490 414 aa11.03□□□□□ -0.64
VPS4B-201ENST00000238497 PDE4AP27815 886 aa11.03□□□□□ -0.64
VPS4B-201ENST00000238497 SSFA2P28290 1259 aa11.03□□□□□ -0.64
VPS4B-201ENST00000238497 CRKLP46109 303 aaKnown RBP11.03□□□□□ -0.64
VPS4B-201ENST00000238497 RSPH6AQ9H0K4 717 aa11.03□□□□□ -0.64
VPS4B-201ENST00000238497 SLC4A3P48751 1232 aa11.03□□□□□ -0.64
VPS4B-201ENST00000238497 IL17REQ8NFR9 667 aa11.03□□□□□ -0.64
VPS4B-201ENST00000238497 FCHSD2O94868 740 aa11.02□□□□□ -0.64
VPS4B-201ENST00000238497 MMP10P09238 476 aa11.02□□□□□ -0.64
VPS4B-201ENST00000238497 NLGN2Q8NFZ4 835 aa11.02□□□□□ -0.64
VPS4B-201ENST00000238497 SMC4Q9NTJ3 1288 aa11.02□□□□□ -0.64
VPS4B-201ENST00000238497 MAP3K5Q99683 1374 aa11.02□□□□□ -0.64
VPS4B-201ENST00000238497 LRP5O75197 1615 aa11.02□□□□□ -0.65
VPS4B-201ENST00000238497 BTBD11A6QL63 1104 aa11.02□□□□□ -0.65
VPS4B-201ENST00000238497 ARHGEF1Q92888 912 aaKnown RBP11.02□□□□□ -0.65
VPS4B-201ENST00000238497 RGPD3A6NKT7 1758 aaPredicted RBP11.02□□□□□ -0.65
VPS4B-201ENST00000238497 RGPD4Q7Z3J3 1758 aa11.02□□□□□ -0.65
VPS4B-201ENST00000238497 RNF123Q5XPI4 1314 aa11.02□□□□□ -0.65
VPS4B-201ENST00000238497 PKD1L3Q7Z443 1732 aa11.02□□□□□ -0.65
VPS4B-201ENST00000238497 SGIP1Q9BQI5 828 aa11.02□□□□□ -0.65
VPS4B-201ENST00000238497 SRP68Q9UHB9 627 aaKnown RBP11.02□□□□□ -0.65
VPS4B-201ENST00000238497 EXOSC9Q06265 439 aaKnown RBP11.01□□□□□ -0.65
VPS4B-201ENST00000238497 MIS18AQ9NYP9 233 aa11.01□□□□□ -0.65
VPS4B-201ENST00000238497 ZPR1O75312 459 aa11.01□□□□□ -0.65
VPS4B-201ENST00000238497 TOGARAM1Q9Y4F4 1720 aa11.01□□□□□ -0.65
VPS4B-201ENST00000238497 RPS6KA4O75676 772 aa11.01□□□□□ -0.65
VPS4B-201ENST00000238497 ZNF496Q96IT1 587 aaPredicted RBP11.01□□□□□ -0.65
VPS4B-201ENST00000238497 ITGB4P16144 1822 aa11.01□□□□□ -0.65
VPS4B-201ENST00000238497 STARD3NLO95772 234 aa11□□□□□ -0.65
VPS4B-201ENST00000238497 BICDL1Q6ZP65 573 aa11□□□□□ -0.65
VPS4B-201ENST00000238497 CCDC87Q9NVE4 849 aa11□□□□□ -0.65
VPS4B-201ENST00000238497 NPHP1O15259 732 aa11□□□□□ -0.65
VPS4B-201ENST00000238497 KCNQ3O43525 872 aa11□□□□□ -0.65
VPS4B-201ENST00000238497 PIP4K2AP48426 406 aaPredicted RBP10.99□□□□□ -0.65
VPS4B-201ENST00000238497 ZNF790Q6PG37 636 aa10.99□□□□□ -0.65
VPS4B-201ENST00000238497 ZBTB1Q9Y2K1 713 aa10.99□□□□□ -0.65
VPS4B-201ENST00000238497 ITPRIPQ8IWB1 547 aa10.99□□□□□ -0.65
VPS4B-201ENST00000238497 NLGN1Q8N2Q7 840 aa10.99□□□□□ -0.65
VPS4B-201ENST00000238497 MYH16Q9H6N6 1097 aa10.99□□□□□ -0.65
VPS4B-201ENST00000238497 NOP58Q9Y2X3 529 aaKnown RBP10.99□□□□□ -0.65
VPS4B-201ENST00000238497 PARP3Q9Y6F1 533 aa10.99□□□□□ -0.65
VPS4B-201ENST00000238497 TMPOP42166 694 aaKnown RBP10.98□□□□□ -0.65
VPS4B-201ENST00000238497 RC3H1Q5TC82 1133 aaKnown RBP10.98□□□□□ -0.65
VPS4B-201ENST00000238497 FMNL2Q96PY5 1086 aa10.98□□□□□ -0.65
VPS4B-201ENST00000238497 PNNQ9H307 717 aaKnown RBP10.98□□□□□ -0.65
VPS4B-201ENST00000238497 NGEFQ8N5V2 710 aa10.98□□□□□ -0.65
VPS4B-201ENST00000238497 PLEKHG2Q9H7P9 1386 aa10.98□□□□□ -0.65
VPS4B-201ENST00000238497 COL3A1P02461 1466 aaPredicted RBP10.97□□□□□ -0.65
VPS4B-201ENST00000238497 USPL1Q5W0Q7 1092 aa10.97□□□□□ -0.65
VPS4B-201ENST00000238497 CNTNAP4Q9C0A0 1308 aa10.97□□□□□ -0.65
VPS4B-201ENST00000238497 TBC1D2BQ9UPU7 963 aa10.97□□□□□ -0.65
VPS4B-201ENST00000238497 ADRA2BP18089 450 aa10.97□□□□□ -0.65
VPS4B-201ENST00000238497 PAPPAQ13219 1627 aa10.97□□□□□ -0.65
VPS4B-201ENST00000238497 LY75O60449 1722 aa10.97□□□□□ -0.65
VPS4B-201ENST00000238497 IGHDP01880 384 aa10.96□□□□□ -0.65
VPS4B-201ENST00000238497 A1BGP04217 495 aa10.96□□□□□ -0.65
VPS4B-201ENST00000238497 CYP19A1P11511 503 aaPredicted RBP10.96□□□□□ -0.65
VPS4B-201ENST00000238497 GYS1P13807 737 aa10.96□□□□□ -0.65
VPS4B-201ENST00000238497 C4BP0C0L5 1744 aa10.96□□□□□ -0.65
VPS4B-201ENST00000238497 CASZ1Q86V15 1759 aa10.96□□□□□ -0.65
VPS4B-201ENST00000238497 RLBP1P12271 317 aa10.96□□□□□ -0.66
VPS4B-201ENST00000238497 INTS5Q6P9B9 1019 aaKnown RBP10.96□□□□□ -0.66
VPS4B-201ENST00000238497 RARSP54136 660 aaKnown RBP10.96□□□□□ -0.66
VPS4B-201ENST00000238497 NFE2L2Q16236 605 aa10.95□□□□□ -0.66
VPS4B-201ENST00000238497 BCS1LQ9Y276 419 aa10.95□□□□□ -0.66
VPS4B-201ENST00000238497 ZNF521Q96K83 1311 aa10.95□□□□□ -0.66
VPS4B-201ENST00000238497 FANCIQ9NVI1 1328 aa10.95□□□□□ -0.66
VPS4B-201ENST00000238497 TAF7Q15545 349 aaPredicted RBP10.95□□□□□ -0.66
VPS4B-201ENST00000238497 C5P01031 1676 aa10.95□□□□□ -0.66
VPS4B-201ENST00000238497 A0A0G2JLW4 131 aa10.94□□□□□ -0.66
VPS4B-201ENST00000238497 PRAMEF22A3QJZ6 481 aa10.94□□□□□ -0.66
VPS4B-201ENST00000238497 TEX13AQ9BXU3 409 aaPredicted RBP10.94□□□□□ -0.66
VPS4B-201ENST00000238497 CD2APQ9Y5K6 639 aa10.94□□□□□ -0.66
VPS4B-201ENST00000238497 CENPQQ7L2Z9 268 aaPredicted RBP10.94□□□□□ -0.66
VPS4B-201ENST00000238497 USP16Q9Y5T5 823 aa10.94□□□□□ -0.66
VPS4B-201ENST00000238497 FAM177BA6PVY3 158 aa10.94□□□□□ -0.66
VPS4B-201ENST00000238497 APBB1O00213 710 aa10.93□□□□□ -0.66
VPS4B-201ENST00000238497 CCDC24Q8N4L8 307 aa10.93□□□□□ -0.66
VPS4B-201ENST00000238497 IPO9Q96P70 1041 aaKnown RBP10.93□□□□□ -0.66
VPS4B-201ENST00000238497 USP42Q9H9J4 1324 aaKnown RBP10.93□□□□□ -0.66
VPS4B-201ENST00000238497 SNRPA1P09661 255 aaKnown RBP10.93□□□□□ -0.66
VPS4B-201ENST00000238497 VSIG10Q8N0Z9 540 aa10.93□□□□□ -0.66
VPS4B-201ENST00000238497 NECTIN2Q92692 538 aa10.93□□□□□ -0.66
VPS4B-201ENST00000238497 TSPYL4Q9UJ04 414 aa10.93□□□□□ -0.66
VPS4B-201ENST00000238497 HEG1Q9ULI3 1381 aa10.93□□□□□ -0.66
VPS4B-201ENST00000238497 EIF2S2P20042 333 aaKnown RBP10.92□□□□□ -0.66
VPS4B-201ENST00000238497 RTL5Q5HYW3 569 aaPredicted RBP10.92□□□□□ -0.66
VPS4B-201ENST00000238497 SSH1Q8WYL5 1049 aa10.92□□□□□ -0.66
VPS4B-201ENST00000238497 NOB1Q9ULX3 412 aaKnown RBP10.92□□□□□ -0.66
VPS4B-201ENST00000238497 GRIN3BO60391 1043 aa10.92□□□□□ -0.66
VPS4B-201ENST00000238497 YBX3P16989 372 aaKnown RBP eCLIP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms