RNA–Protein interactions for RNA: ENST00000225441.11

RUNDC3A-201, Transcript of RUN domain containing 3A, humanhuman

TSL 1 (best) BASIC

Gene RUNDC3A, Length 1,821 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3A-201ENST00000225441 KDM6AO15550 1401 aaPredicted RBP30.76■■■□□ 2.51
RUNDC3A-201ENST00000225441 TTC22Q5TAA0 569 aa30.76■■■□□ 2.51
RUNDC3A-201ENST00000225441 FAM43AQ8N2R8 423 aa30.76■■■□□ 2.51
RUNDC3A-201ENST00000225441 SPRYD3Q8NCJ5 442 aa30.75■■■□□ 2.51
RUNDC3A-201ENST00000225441 NGLY1Q96IV0 654 aa30.75■■■□□ 2.51
RUNDC3A-201ENST00000225441 TRAK2O60296 914 aa30.75■■■□□ 2.51
RUNDC3A-201ENST00000225441 GBP4Q96PP9 640 aa30.75■■■□□ 2.51
RUNDC3A-201ENST00000225441 SHANK3Q9BYB0 1731 aa30.75■■■□□ 2.51
RUNDC3A-201ENST00000225441 SPATA31A1Q5TZJ5 1347 aa30.74■■■□□ 2.51
RUNDC3A-201ENST00000225441 SCN11AQ9UI33 1791 aa30.74■■■□□ 2.51
RUNDC3A-201ENST00000225441 K7ELQ4 463 aaPredicted RBP30.74■■■□□ 2.51
RUNDC3A-201ENST00000225441 CEP85Q6P2H3 762 aa30.74■■■□□ 2.51
RUNDC3A-201ENST00000225441 WNK3Q9BYP7 1800 aa30.74■■■□□ 2.51
RUNDC3A-201ENST00000225441 UNC5CLQ8IV45 518 aa30.73■■■□□ 2.51
RUNDC3A-201ENST00000225441 GOLGA6L3A6NEY3 463 aa30.73■■■□□ 2.51
RUNDC3A-201ENST00000225441 HMMRO75330 724 aa30.73■■■□□ 2.51
RUNDC3A-201ENST00000225441 DCAF5Q96JK2 942 aa30.73■■■□□ 2.51
RUNDC3A-201ENST00000225441 CCT4P50991 539 aaKnown RBP30.72■■■□□ 2.51
RUNDC3A-201ENST00000225441 RAB3GAP1Q15042 981 aa30.72■■■□□ 2.51
RUNDC3A-201ENST00000225441 SKOR2Q2VWA4 1001 aaPredicted RBP30.72■■■□□ 2.51
RUNDC3A-201ENST00000225441 SPATA31A5Q5VU36 1347 aa30.72■■■□□ 2.51
RUNDC3A-201ENST00000225441 SPATA31A7Q8IWB4 1347 aa30.72■■■□□ 2.51
RUNDC3A-201ENST00000225441 BCL9LQ86UU0 1499 aa30.71■■■□□ 2.51
RUNDC3A-201ENST00000225441 RABEP1Q15276 862 aa30.71■■■□□ 2.51
RUNDC3A-201ENST00000225441 FNBP4Q8N3X1 1017 aaPredicted RBP30.71■■■□□ 2.51
RUNDC3A-201ENST00000225441 THRAP3Q9Y2W1 955 aaKnown RBP30.71■■■□□ 2.51
RUNDC3A-201ENST00000225441 GSPT1P15170 499 aaKnown RBP30.7■■■□□ 2.51
RUNDC3A-201ENST00000225441 SIPA1L3O60292 1781 aaPredicted RBP30.7■■■□□ 2.51
RUNDC3A-201ENST00000225441 KRT24Q2M2I5 525 aa30.7■■■□□ 2.5
RUNDC3A-201ENST00000225441 CASC1Q6TDU7 716 aa30.7■■■□□ 2.5
RUNDC3A-201ENST00000225441 KDM3BQ7LBC6 1761 aa30.7■■■□□ 2.5
RUNDC3A-201ENST00000225441 MRC1P22897 1456 aa30.68■■■□□ 2.5
RUNDC3A-201ENST00000225441 NKX1-1Q15270 411 aaPredicted RBP30.67■■■□□ 2.5
RUNDC3A-201ENST00000225441 MEX3CQ5U5Q3 659 aaKnown RBP30.67■■■□□ 2.5
RUNDC3A-201ENST00000225441 CLEC17AQ6ZS10 378 aa30.67■■■□□ 2.5
RUNDC3A-201ENST00000225441 CDCA7Q9BWT1 371 aaPredicted RBP30.67■■■□□ 2.5
RUNDC3A-201ENST00000225441 BTBD11A6QL63 1104 aa30.66■■■□□ 2.5
RUNDC3A-201ENST00000225441 DDX54Q8TDD1 881 aaKnown RBP30.66■■■□□ 2.5
RUNDC3A-201ENST00000225441 SLC52A2Q9HAB3 445 aa30.66■■■□□ 2.5
RUNDC3A-201ENST00000225441 CCDC9Q9Y3X0 531 aaKnown RBP30.66■■■□□ 2.5
RUNDC3A-201ENST00000225441 SLC4A2P04920 1241 aa30.65■■■□□ 2.5
RUNDC3A-201ENST00000225441 VPS72Q15906 364 aa30.65■■■□□ 2.5
RUNDC3A-201ENST00000225441 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.65■■■□□ 2.5
RUNDC3A-201ENST00000225441 TNPO1Q92973 898 aaKnown RBP30.64■■■□□ 2.5
RUNDC3A-201ENST00000225441 OSBPL3Q9H4L5 887 aa30.64■■■□□ 2.5
RUNDC3A-201ENST00000225441 HSP90AA1P07900 732 aaKnown RBP30.63■■■□□ 2.49
RUNDC3A-201ENST00000225441 USP21Q9UK80 565 aa30.63■■■□□ 2.49
RUNDC3A-201ENST00000225441 TNS2Q63HR2 1409 aa30.62■■■□□ 2.49
RUNDC3A-201ENST00000225441 MRE11P49959 708 aa30.62■■■□□ 2.49
RUNDC3A-201ENST00000225441 BARGINQ6ZT62 677 aa30.62■■■□□ 2.49
RUNDC3A-201ENST00000225441 RTN4Q9NQC3 1192 aaKnown RBP30.62■■■□□ 2.49
RUNDC3A-201ENST00000225441 USP26Q9BXU7 913 aa30.61■■■□□ 2.49
RUNDC3A-201ENST00000225441 EXOC5O00471 708 aa30.61■■■□□ 2.49
RUNDC3A-201ENST00000225441 EIF4A1P60842 406 aaKnown RBP30.6■■■□□ 2.49
RUNDC3A-201ENST00000225441 NFATC2IPQ8NCF5 419 aa30.6■■■□□ 2.49
RUNDC3A-201ENST00000225441 CACNA1FO60840 1977 aa30.6■■■□□ 2.49
RUNDC3A-201ENST00000225441 KCNQ3O43525 872 aa30.59■■■□□ 2.49
RUNDC3A-201ENST00000225441 MEIS3Q99687 375 aa30.59■■■□□ 2.49
RUNDC3A-201ENST00000225441 REC8O95072 547 aa30.59■■■□□ 2.49
RUNDC3A-201ENST00000225441 CABP4P57796 275 aa30.59■■■□□ 2.49
RUNDC3A-201ENST00000225441 STK31Q9BXU1 1019 aa30.59■■■□□ 2.49
RUNDC3A-201ENST00000225441 FBXO41Q8TF61 875 aa30.58■■■□□ 2.49
RUNDC3A-201ENST00000225441 ERVV-2B6SEH9 535 aa30.57■■■□□ 2.48
RUNDC3A-201ENST00000225441 XRCC6P12956 609 aaKnown RBP eCLIP30.57■■■□□ 2.48
RUNDC3A-201ENST00000225441 CCDC30Q5VVM6 783 aa30.57■■■□□ 2.48
RUNDC3A-201ENST00000225441 AFF2P51816 1311 aa30.56■■■□□ 2.48
RUNDC3A-201ENST00000225441 GOLGA6L22H0YM25 854 aa30.56■■■□□ 2.48
RUNDC3A-201ENST00000225441 GNAI3P08754 354 aa30.56■■■□□ 2.48
RUNDC3A-201ENST00000225441 SDSP20132 328 aa30.56■■■□□ 2.48
RUNDC3A-201ENST00000225441 GNAI2P04899 355 aa30.55■■■□□ 2.48
RUNDC3A-201ENST00000225441 DDB1Q16531 1140 aa30.55■■■□□ 2.48
RUNDC3A-201ENST00000225441 PXDNLA1KZ92 1463 aa30.55■■■□□ 2.48
RUNDC3A-201ENST00000225441 CWC22Q9HCG8 908 aaKnown RBP30.54■■■□□ 2.48
RUNDC3A-201ENST00000225441 TOGARAM1Q9Y4F4 1720 aa30.54■■■□□ 2.48
RUNDC3A-201ENST00000225441 N4BP2Q86UW6 1770 aaPredicted RBP30.54■■■□□ 2.48
RUNDC3A-201ENST00000225441 CD2BP2O95400 341 aaKnown RBP30.54■■■□□ 2.48
RUNDC3A-201ENST00000225441 NUCB2P80303 420 aa30.54■■■□□ 2.48
RUNDC3A-201ENST00000225441 ZNF790Q6PG37 636 aa30.53■■■□□ 2.48
RUNDC3A-201ENST00000225441 C16orf71Q8IYS4 520 aaPredicted RBP30.53■■■□□ 2.48
RUNDC3A-201ENST00000225441 HOXB7P09629 217 aa30.52■■■□□ 2.48
RUNDC3A-201ENST00000225441 HEG1Q9ULI3 1381 aa30.52■■■□□ 2.48
RUNDC3A-201ENST00000225441 SLC39A6Q13433 755 aa30.52■■■□□ 2.48
RUNDC3A-201ENST00000225441 CHMP4AQ9BY43 222 aa30.52■■■□□ 2.48
RUNDC3A-201ENST00000225441 FAM98CQ17RN3 349 aaKnown RBP30.51■■■□□ 2.47
RUNDC3A-201ENST00000225441 ST18O60284 1047 aa30.5■■■□□ 2.47
RUNDC3A-201ENST00000225441 ERC2O15083 957 aa30.5■■■□□ 2.47
RUNDC3A-201ENST00000225441 RBM42Q9BTD8 480 aaKnown RBP30.5■■■□□ 2.47
RUNDC3A-201ENST00000225441 GZF1Q9H116 711 aaPredicted RBP30.48■■■□□ 2.47
RUNDC3A-201ENST00000225441 ATRNO75882 1429 aa30.48■■■□□ 2.47
RUNDC3A-201ENST00000225441 G2E3Q7L622 706 aa30.47■■■□□ 2.47
RUNDC3A-201ENST00000225441 TTC5Q8N0Z6 440 aa30.47■■■□□ 2.47
RUNDC3A-201ENST00000225441 PDE1AP54750 535 aa30.47■■■□□ 2.47
RUNDC3A-201ENST00000225441 IBTKQ9P2D0 1353 aaPredicted RBP30.47■■■□□ 2.47
RUNDC3A-201ENST00000225441 GLI3P10071 1580 aa30.46■■■□□ 2.47
RUNDC3A-201ENST00000225441 GIGYF1O75420 1035 aaPredicted RBP30.46■■■□□ 2.47
RUNDC3A-201ENST00000225441 HDGFL1Q5TGJ6 251 aa30.46■■■□□ 2.47
RUNDC3A-201ENST00000225441 OTUD7AQ8TE49 926 aaPredicted RBP30.46■■■□□ 2.47
RUNDC3A-201ENST00000225441 SRCIN1Q9C0H9 1055 aa30.46■■■□□ 2.47
RUNDC3A-201ENST00000225441 GRPEL1Q9HAV7 217 aa30.46■■■□□ 2.47
RUNDC3A-201ENST00000225441 PAPPAQ13219 1627 aa30.46■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms