RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CLDN8P56748 225 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 PHEXP78562 749 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 HKDC1Q2TB90 917 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 SPIN4Q56A73 249 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 TRIM61Q5EBN2 209 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 C10orf62Q5T681 223 aaPredicted RBP19.21■□□□□ 0.67
CLN3-250ENST00000636839 VN1R4Q7Z5H5 301 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 TRIM8Q9BZR9 551 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 CAPN10Q9HC96 672 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 NDUFAF1Q9Y375 327 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 ENTPD2Q9Y5L3 495 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 CSNK1G3Q9Y6M4 447 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 LOC105369274A0A096LPK9 316 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 LOC102723532A0A0G2JNH3 316 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 A0A1W2PP18 115 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 GNG14A0A1W2PPG7 69 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 LRIT2A6NDA9 550 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 NDUFS4O43181 175 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 PROS1P07225 676 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 CNR2P34972 360 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 PPM1FP49593 454 aaPredicted RBP19.2■□□□□ 0.66
CLN3-250ENST00000636839 PLA2G16P53816 162 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 OR1D5P58170 312 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 DUOXA1Q1HG43 343 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 IRGCQ6NXR0 463 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 FAM92BQ6ZTR7 304 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 RIMKLAQ8IXN7 391 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 OR4N4Q8N0Y3 316 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 MMP21Q8N119 569 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 MFSD9Q8NBP5 474 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 SAP25Q8TEE9 199 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 PITHD1Q9GZP4 211 aaPredicted RBP19.2■□□□□ 0.66
CLN3-250ENST00000636839 CLMPQ9H6B4 373 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 BTBD3Q9Y2F9 522 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 AP1M2Q9Y6Q5 423 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 ASXL3Q9C0F0 2248 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 PCDH15Q96QU1 1955 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 GPR179Q6PRD1 2367 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 A0A088AWK7 358 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 CFAP73A6NFT4 308 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 RHPN2P1A8MT19 583 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 ANGPT2O15123 496 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 PDE5AO76074 875 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 ST6GAL1P15907 406 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 MAPK1P28482 360 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 GFERP55789 205 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 FRMPD2BQ6IN97 320 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 TCEAL6Q6IPX3 200 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 ARMC6Q6NXE6 501 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 ARL10Q8N8L6 244 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 Q8N9G6 341 aaPredicted RBP19.2■□□□□ 0.66
CLN3-250ENST00000636839 OR7A2PQ8NGA2 310 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 TCEAL3Q969E4 200 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 MCUR1Q96AQ8 359 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 SARGQ9BW04 601 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 WDR41Q9HAD4 459 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 FAM60AQ9NP50 221 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 NMRK1Q9NWW6 199 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 PILRAQ9UKJ1 303 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 POMT2Q9UKY4 750 aa19.2■□□□□ 0.66
CLN3-250ENST00000636839 EXO1Q9UQ84 846 aaKnown RBP19.2■□□□□ 0.66
CLN3-250ENST00000636839 CLEC3AO75596 197 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 MYO1DO94832 1006 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 CTSBP07858 339 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 HRH2P25021 359 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 TPP2P29144 1249 aaPredicted RBP19.19■□□□□ 0.66
CLN3-250ENST00000636839 BSGP35613 385 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 MC1RQ01726 317 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 CAPRIN1Q14444 709 aaKnown RBP19.19■□□□□ 0.66
CLN3-250ENST00000636839 SLC5A12Q1EHB4 618 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 GALNT18Q6P9A2 607 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 KCT2Q8NC54 265 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 OR2A5Q96R48 311 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 C17orf62Q9BQA9 187 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 REXO4Q9GZR2 422 aaKnown RBP19.19■□□□□ 0.66
CLN3-250ENST00000636839 ADGRE2Q9UHX3 823 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 PCDHGA7Q9Y5G6 932 aa19.19■□□□□ 0.66
CLN3-250ENST00000636839 A0A0J9YY10 115 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 P2RX6O15547 441 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 CAPZBP47756 277 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 IRX1P78414 480 aaPredicted RBP19.18■□□□□ 0.66
CLN3-250ENST00000636839 PGS1Q32NB8 556 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 DNAL1Q4LDG9 190 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 RNF148Q8N7C7 305 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 BAHD1Q8TBE0 780 aaPredicted RBP19.18■□□□□ 0.66
CLN3-250ENST00000636839 TRAPPC9Q96Q05 1148 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 TEFMQ96QE5 360 aaKnown RBP19.18■□□□□ 0.66
CLN3-250ENST00000636839 CDRT15Q96T59 188 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 MAP3K3Q99759 626 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 UCK1Q9HA47 277 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 LILRA5A6NI73 299 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 SLC9B1P1A6NJY1 282 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 ACPPP15309 386 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 EFNA1P20827 205 aaPredicted RBP19.18■□□□□ 0.66
CLN3-250ENST00000636839 MSX2P35548 267 aaPredicted RBP19.18■□□□□ 0.66
CLN3-250ENST00000636839 AHRP35869 848 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 RAP1GDS1P52306 607 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 UGT8Q16880 541 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 ULK2Q8IYT8 1036 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 FAM13CQ8NE31 585 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms