RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ANKRD53Q8N9V6 530 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 ZCCHC10Q8TBK6 192 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 STT3BQ8TCJ2 826 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 SLC39A7Q92504 469 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 PARD6BQ9BYG5 372 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 MKKSQ9NPJ1 570 aaPredicted RBP19.66■□□□□ 0.74
CLN3-240ENST00000631023 MRPS2Q9Y399 296 aaKnown RBP19.66■□□□□ 0.74
CLN3-240ENST00000631023 ASB1Q9Y576 335 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 ANKDD1BA6NHY2 528 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 EIF4E1BA6NMX2 242 aaKnown RBP19.66■□□□□ 0.74
CLN3-240ENST00000631023 ZGLP1P0C6A0 271 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 SLCO1A2P46721 670 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 PIK3CGP48736 1102 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 POLE2P56282 527 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 DOC2AQ14183 400 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 PCSK4Q6UW60 755 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 ABHD13Q7L211 337 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 TEX9Q8N6V9 391 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 AMER3Q8N944 861 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 OR9A4Q8NGU2 314 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 CAVIN3Q969G5 261 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 MOCOSQ96EN8 888 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 SPSB2Q99619 263 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 ADNPQ9H2P0 1102 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 COPG2Q9UBF2 871 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 IGLV3-12A0A075B6K2 115 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 PEX12O00623 359 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 CDH16O75309 829 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 IGHEP01854 428 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 SERPINA6P08185 405 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 IL1RNP18510 177 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 KRT15P19012 456 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 HPDP32754 393 aaPredicted RBP19.65■□□□□ 0.74
CLN3-240ENST00000631023 CASP2P42575 452 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 PCDH1Q08174 1060 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 SOWAHCQ53LP3 525 aaPredicted RBP19.65■□□□□ 0.74
CLN3-240ENST00000631023 APLFQ8IW19 511 aaPredicted RBP19.65■□□□□ 0.74
CLN3-240ENST00000631023 UBE2E3Q969T4 207 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 VPS50Q96JG6 964 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 SOX17Q9H6I2 414 aaPredicted RBP19.65■□□□□ 0.74
CLN3-240ENST00000631023 C14orf105Q9NVL8 296 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 DCDC2Q9UHG0 476 aa19.65■□□□□ 0.74
CLN3-240ENST00000631023 DOCK10Q96BY6 2186 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 SMIM23A6NLE4 172 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 STX16-NPEPL1H3BU86 382 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 GOLGA8RI6L899 631 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 STX16O14662 325 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 WFS1O76024 890 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 UMODP07911 640 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 GSTA1P08263 222 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 FAM87AP0C7U9 286 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 PYGBP11216 843 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 EPORP19235 508 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 MMP11P24347 488 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 RRADP55042 308 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 STXBP1P61764 594 aaKnown RBP19.64■□□□□ 0.73
CLN3-240ENST00000631023 VWA2Q5GFL6 755 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 SHISA6Q6ZSJ9 500 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.64■□□□□ 0.73
CLN3-240ENST00000631023 PTGR2Q8N8N7 351 aaPredicted RBP19.64■□□□□ 0.73
CLN3-240ENST00000631023 TMEM102Q8N9M5 508 aaPredicted RBP19.64■□□□□ 0.73
CLN3-240ENST00000631023 CREB3L4Q8TEY5 395 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 CCT6BQ92526 530 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 PHF21BQ96EK2 531 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 BBC3Q96PG8 261 aaPredicted RBP19.64■□□□□ 0.73
CLN3-240ENST00000631023 TGIF2Q9GZN2 237 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 SLC6A16Q9GZN6 736 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 SEMA3GQ9NS98 782 aa19.64■□□□□ 0.73
CLN3-240ENST00000631023 PRAMEF4O60810 478 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 CLEC3AO75596 197 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 ALOX12P18054 663 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 TAC1P20366 129 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 IFFO1Q0D2I5 559 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 GTF2H2Q13888 395 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 LY6DQ14210 128 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 PRAMEF9Q5VWM5 478 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 GTF2H2CQ6P1K8 395 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 MED25Q71SY5 747 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 MRGPREQ86SM8 312 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 AFAP1L2Q8N4X5 818 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 EPS8L3Q8TE67 593 aaKnown RBP19.63■□□□□ 0.73
CLN3-240ENST00000631023 MZB1Q8WU39 189 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 CRB3Q9BUF7 120 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 PRM3Q9NNZ6 103 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 ACSS2Q9NR19 701 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 TUBD1Q9UJT1 453 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 NAALAD2Q9Y3Q0 740 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 SPTA1P02549 2419 aa19.63■□□□□ 0.73
CLN3-240ENST00000631023 ARGFXA6NJG6 315 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 SGK494L7N484 410 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 KLHL18O94889 574 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 SIX3O95343 332 aaPredicted RBP19.62■□□□□ 0.73
CLN3-240ENST00000631023 NUDT17P0C025 328 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 ZNF888P0CJ79 500 aaPredicted RBP19.62■□□□□ 0.73
CLN3-240ENST00000631023 HNF4AP41235 474 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 FOXL2P58012 376 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 KLC1Q07866 573 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 ATP1A4Q13733 1029 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 E2F2Q14209 437 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 PRSS41Q7RTY9 318 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms