RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 VMACQ2NL98 169 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 AFTPHQ6ULP2 937 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 MSANTD1Q6ZTZ1 278 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 CBLL1Q75N03 491 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 MILR1Q7Z6M3 343 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 OR8H1Q8NGG4 311 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 ESAMQ96AP7 390 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 FCRL2Q96LA5 508 aaPredicted RBP10.45□□□□□ -0.74
UPF3A-212ENST00000619079 DCLRE1CQ96SD1 692 aaKnown RBP10.45□□□□□ -0.74
UPF3A-212ENST00000619079 CNPPD1Q9BV87 410 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 BARHL1Q9BZE3 327 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 TNKS2Q9H2K2 1166 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 LRTM1Q9HBL6 345 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 RAD18Q9NS91 495 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 RNF19AQ9NV58 838 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 ALG5Q9Y673 324 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 ARL5AQ9Y689 179 aa10.45□□□□□ -0.74
UPF3A-212ENST00000619079 LAMA3Q16787 3333 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 GFRA2O00451 464 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 OR7A17O14581 309 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 MYL12BO14950 172 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 IRAK2O43187 625 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 ORC5O43913 435 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 SERPINI2O75830 405 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 TSPAN12O95859 305 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 EPOP01588 193 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 TSPAN19P0C672 248 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 ANXA8P13928 327 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 KCNE1P15382 129 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 GABRB1P18505 474 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 MYL12AP19105 171 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 HOXA11P31270 313 aaPredicted RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 MAP2K3P46734 347 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 MAXP61244 160 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 SNRPD2P62316 118 aaKnown RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 RHAGQ02094 409 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 RGS1Q08116 209 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 BAMBIQ13145 260 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 PCBP1Q15365 356 aaKnown RBP eCLIP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 DDI2Q5TDH0 399 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 LAMTOR1Q6IAA8 161 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 MSANTD2Q6P1R3 559 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 OTOP2Q7RTS6 562 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 CAMKK1Q8N5S9 505 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 CLDN22Q8N7P3 220 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 B3GNT7Q8NFL0 401 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 OR9Q1Q8NGQ5 310 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 SH3KBP1Q96B97 665 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 LINGO1Q96FE5 620 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 SMARCD1Q96GM5 515 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 SP110Q9HB58 689 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 SERHLQ9NQF3 203 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 SLC6A13Q9NSD5 602 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 PHF11Q9UIL8 331 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 DUSP12Q9UNI6 340 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 ASB1Q9Y576 335 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 ALPK3Q96L96 1907 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 TNRC18O15417 2968 aaPredicted RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 BTN3A3O00478 584 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 ADAMDEC1O15204 470 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 RFPL3O75679 317 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 CSF2P04141 144 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 PRKAR1AP10644 381 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 PKMP14618 531 aaKnown RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 HOXB9P17482 250 aaPredicted RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 ATF4P18848 351 aaPredicted RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 TNNI3P19429 210 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 RRAS2P62070 204 aaPredicted RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 TP53BP2Q13625 1128 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 MFSD13AQ14CX5 517 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 VEPH1Q14D04 833 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 LARS2Q15031 903 aaKnown RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 SSX1Q16384 188 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 WSCD1Q658N2 575 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 PAMR1Q6UXH9 720 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 TRIM46Q7Z4K8 759 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 CDH24Q86UP0 819 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 UMODL1-AS1Q8N2C9 162 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 C10orf111Q8N326 155 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 KRTCAP2Q8N6L1 136 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 ZNF557Q8N988 423 aaPredicted RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 C19orf18Q8NEA5 215 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 DUSP18Q8NEJ0 188 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 WDR36Q8NI36 951 aaKnown RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 GPR152Q8TDT2 470 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 CDKN2AIPNLQ96HQ2 116 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 OR5M11Q96RB7 305 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 IPPKQ9H8X2 491 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 IL23AQ9NPF7 189 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 SNTG1Q9NSN8 517 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 NDFIP2Q9NV92 336 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 RBFOX1Q9NWB1 397 aaKnown RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 MS4A12Q9NXJ0 267 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 SLC23A1Q9UHI7 598 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 ELF5Q9UKW6 265 aaPredicted RBP10.44□□□□□ -0.74
UPF3A-212ENST00000619079 CEP290O15078 2479 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 BPTFQ12830 3046 aa10.44□□□□□ -0.74
UPF3A-212ENST00000619079 A8MVJ9 347 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 E9PAM4 449 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms