RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 PDLIM5Q96HC4 596 aaKnown RBP7.18□□□□□ -1.26
CUX1-219ENST00000606749 ZNF354BQ96LW1 612 aa7.18□□□□□ -1.26
CUX1-219ENST00000606749 OR1F2PQ96R84 312 aa7.18□□□□□ -1.26
CUX1-219ENST00000606749 NPAS2Q99743 824 aa7.18□□□□□ -1.26
CUX1-219ENST00000606749 OLFM1Q99784 485 aa7.18□□□□□ -1.26
CUX1-219ENST00000606749 TRIM54Q9BYV2 358 aa7.18□□□□□ -1.26
CUX1-219ENST00000606749 KCNK13Q9HB14 408 aa7.18□□□□□ -1.26
CUX1-219ENST00000606749 MMP25Q9NPA2 562 aa7.18□□□□□ -1.26
CUX1-219ENST00000606749 LANCL2Q9NS86 450 aa7.18□□□□□ -1.26
CUX1-219ENST00000606749 SLC17A6Q9P2U8 582 aa7.18□□□□□ -1.26
CUX1-219ENST00000606749 C19orf25Q9UFG5 118 aaPredicted RBP7.18□□□□□ -1.26
CUX1-219ENST00000606749 IKZF3Q9UKT9 509 aa7.18□□□□□ -1.26
CUX1-219ENST00000606749 TEX264Q9Y6I9 313 aa7.18□□□□□ -1.26
CUX1-219ENST00000606749 SVILO95425 2214 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 CROCCQ5TZA2 2017 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 ZNF860A6NHJ4 632 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 MAGEB17A8MXT2 336 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 NDUFS4O43181 175 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 ZSCAN12O43309 604 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 CHST10O43529 356 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 MAN1A2O60476 641 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 GALR3O60755 368 aaPredicted RBP7.17□□□□□ -1.26
CUX1-219ENST00000606749 CDC123O75794 336 aaPredicted RBP7.17□□□□□ -1.26
CUX1-219ENST00000606749 UNC5CO95185 931 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 B3GALT4O96024 378 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 TCP1P17987 556 aaKnown RBP7.17□□□□□ -1.26
CUX1-219ENST00000606749 ALOX12P18054 663 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 AHRP35869 848 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 SCTRP47872 440 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 ST13P50502 369 aaKnown RBP7.17□□□□□ -1.26
CUX1-219ENST00000606749 TUBA3CQ13748 450 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 FRG1Q14331 258 aaKnown RBP7.17□□□□□ -1.26
CUX1-219ENST00000606749 CSHL1Q14406 222 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 ABRAXAS2Q15018 415 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 MEP1AQ16819 746 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 DEFB134Q4QY38 66 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 SFT2D3Q587I9 215 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 ZNF766Q5HY98 468 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 STEAP4Q687X5 459 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 FAM45BPQ6NSW5 357 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 TUBA3EQ6PEY2 450 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 PAPD4Q6PIY7 484 aaKnown RBP7.17□□□□□ -1.26
CUX1-219ENST00000606749 SBSNQ6UWP8 590 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 SYDE1Q6ZW31 735 aaPredicted RBP7.17□□□□□ -1.26
CUX1-219ENST00000606749 CREG2Q8IUH2 290 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 CRLF3Q8IUI8 442 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 PDIK1LQ8N165 341 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 BEST3Q8N1M1 668 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 NT5CQ8TCD5 201 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 FAM45AQ8TCE6 357 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 ATL1Q8WXF7 558 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 NEIL2Q969S2 332 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 TBC1D20Q96BZ9 403 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 LRRC39Q96DD0 335 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 CFAP36Q96G28 342 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 SIGLEC12Q96PQ1 595 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 LPAR4Q99677 370 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 WDR83Q9BRX9 315 aaKnown RBP7.17□□□□□ -1.26
CUX1-219ENST00000606749 SPNS1Q9H2V7 528 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 COPG2Q9UBF2 871 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 SEC14L3Q9UDX4 400 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 ZFP69BQ9UJL9 534 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 CORO1CQ9ULV4 474 aaPredicted RBP7.17□□□□□ -1.26
CUX1-219ENST00000606749 CHMP2BQ9UQN3 213 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 PCDHGB6Q9Y5F9 930 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 TEX15Q9BXT5 2789 aa7.17□□□□□ -1.26
CUX1-219ENST00000606749 MYO7BQ6PIF6 2116 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 DIDO1Q9BTC0 2240 aaKnown RBP7.16□□□□□ -1.26
CUX1-219ENST00000606749 CPAMD8Q8IZJ3 1885 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 CTAGE15A4D2H0 777 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 PABPN1LA6NDY0 278 aaKnown RBP7.16□□□□□ -1.26
CUX1-219ENST00000606749 CDC7O00311 574 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 CCL21O00585 134 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 TP73O15350 636 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 TTI1O43156 1089 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 B4GALT2O60909 372 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 SERPIND1P05546 499 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 FHP07954 510 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 ENO2P09104 434 aaPredicted RBP7.16□□□□□ -1.26
CUX1-219ENST00000606749 ZNF888P0CJ79 500 aaPredicted RBP7.16□□□□□ -1.26
CUX1-219ENST00000606749 SMIM10L1P0DMW3 83 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 ITGA8P53708 1063 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 ARL4CP56559 192 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 OR4D2P58180 307 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 SLC26A5P58743 744 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 SKP1P63208 163 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 OLR1P78380 273 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 BTG2P78543 158 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 PMP22Q01453 160 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 DR1Q01658 176 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 RGS1Q08116 209 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 HYAL2Q12891 473 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 USP10Q14694 798 aaKnown RBP7.16□□□□□ -1.26
CUX1-219ENST00000606749 PPP1R3AQ16821 1122 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.16□□□□□ -1.263e-7■□□□□ 8.8
CUX1-219ENST00000606749 SPINK14Q6IE38 97 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 NIPAL1Q6NVV3 410 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 NXPE4Q6UWF7 544 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 ABHD13Q7L211 337 aa7.16□□□□□ -1.26
CUX1-219ENST00000606749 CTAGE6Q86UF2 777 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms