RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 METP08581 1390 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 A0A087WUV0 522 aaPredicted RBP4.45□□□□□ -1.7
NUP88-213ENST00000576862 TEX28O15482 410 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 KRT33AO76009 404 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 ATP1B1P05026 303 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 ALDH1B1P30837 517 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 KIF5BP33176 963 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 TAF6P49848 677 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 XGP55808 180 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 GSCP56915 257 aaPredicted RBP4.45□□□□□ -1.7
NUP88-213ENST00000576862 DLK1P80370 383 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 COG2Q14746 738 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 MTF1Q14872 753 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 NECTIN1Q15223 517 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 NONOQ15233 471 aaKnown RBP eCLIP4.45□□□□□ -1.7
NUP88-213ENST00000576862 LACTB2Q53H82 288 aaPredicted RBP4.45□□□□□ -1.7
NUP88-213ENST00000576862 HSP90B2PQ58FF3 399 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 WLSQ5T9L3 541 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 TRIM65Q6PJ69 517 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 CATSPERDQ86XM0 798 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 NOA1Q8NC60 698 aaKnown RBP4.45□□□□□ -1.7
NUP88-213ENST00000576862 OR6S1Q8NH40 331 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 ZNF519Q8TB69 540 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 MAPK15Q8TD08 544 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 MRPS27Q92552 414 aaKnown RBP4.45□□□□□ -1.7
NUP88-213ENST00000576862 PIK3R3Q92569 461 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 EXT2Q93063 718 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 VPS33AQ96AX1 596 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 TBC1D31Q96DN5 1066 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 SPATA33Q96N06 139 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 PRAM1Q96QH2 718 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 ZNF300Q96RE9 604 aaPredicted RBP4.45□□□□□ -1.7
NUP88-213ENST00000576862 NAA11Q9BSU3 229 aaPredicted RBP4.45□□□□□ -1.7
NUP88-213ENST00000576862 SLC25A23Q9BV35 468 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 FAM129AQ9BZQ8 928 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 SNX5Q9Y5X3 404 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 LIPGQ9Y5X9 500 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 CACNA1FO60840 1977 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 YTHDC2Q9H6S0 1430 aaKnown RBP4.45□□□□□ -1.7
NUP88-213ENST00000576862 IQGAP1P46940 1657 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 PREX1Q8TCU6 1659 aa4.45□□□□□ -1.7
NUP88-213ENST00000576862 BRD4O60885 1362 aaPredicted RBP4.44□□□□□ -1.7
NUP88-213ENST00000576862 LRPPRCP42704 1394 aaKnown RBP4.44□□□□□ -1.7
NUP88-213ENST00000576862 HEG1Q9ULI3 1381 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 PLEKHH1Q9ULM0 1364 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 E9PQ18 207 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 H0YAE9 185 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 RPS6KA5O75582 802 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 GLULP15104 373 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 EEF1DP29692 281 aaKnown RBP4.44□□□□□ -1.7
NUP88-213ENST00000576862 HNF4AP41235 474 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 TNNT2P45379 298 aaPredicted RBP4.44□□□□□ -1.7
NUP88-213ENST00000576862 RAD23AP54725 363 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 MYL7Q01449 175 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 CAMK2DQ13557 499 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 HYAL4Q2M3T9 481 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 SUSD4Q5VX71 490 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 LYSMD4Q5XG99 296 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 PLBD1Q6P4A8 553 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 LRRTM1Q86UE6 522 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 GTSCR1Q86UQ5 136 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 RYBPQ8N488 228 aaPredicted RBP4.44□□□□□ -1.7
NUP88-213ENST00000576862 ZNF713Q8N859 430 aaPredicted RBP4.44□□□□□ -1.7
NUP88-213ENST00000576862 PRSS33Q8NF86 280 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 FAM218AQ96MZ4 157 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 AGAP3Q96P47 875 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 TRIM51Q9BSJ1 452 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 WWTR1Q9GZV5 400 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 OR10A4Q9H209 315 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 DBNDD1Q9H9R9 158 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 CCDC177Q9NQR7 707 aaPredicted RBP4.44□□□□□ -1.7
NUP88-213ENST00000576862 SPHK2Q9NRA0 654 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 ARGLU1Q9NWB6 273 aaPredicted RBP4.44□□□□□ -1.7
NUP88-213ENST00000576862 DCAF16Q9NXF7 216 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 KNSTRNQ9Y448 316 aa4.44□□□□□ -1.7
NUP88-213ENST00000576862 CLTCQ00610 1675 aaKnown RBP4.44□□□□□ -1.7
NUP88-213ENST00000576862 IFT172Q9UG01 1749 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 NLRP1Q9C000 1473 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 ABCC11Q96J66 1382 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 NPC1L1Q9UHC9 1359 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 TULP4Q9NRJ4 1543 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 MPTX1A8MV57 137 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.43□□□□□ -1.7
NUP88-213ENST00000576862 CCDC159P0C7I6 412 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 TCF4P15884 667 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 ERCC2P18074 760 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 RPL35AP18077 110 aaKnown RBP4.43□□□□□ -1.7
NUP88-213ENST00000576862 PPP2R1AP30153 589 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 HSPA4P34932 840 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 SOX3P41225 446 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 HUNKP57058 714 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 MZT1Q08AG7 82 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 TMED1Q13445 227 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 PSMD6Q15008 389 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 PTGISQ16647 500 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 SNAI3Q3KNW1 292 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 PARP10Q53GL7 1025 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 DNAJC21Q5F1R6 531 aaKnown RBP4.43□□□□□ -1.7
NUP88-213ENST00000576862 DOK6Q6PKX4 331 aa4.43□□□□□ -1.7
NUP88-213ENST00000576862 METTL7BQ6UX53 244 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms