RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SLBPQ14493 270 aaKnown RBP eCLIP9.7□□□□□ -0.86
VPS53-220ENST00000576149 HNRNPA1L2Q32P51 320 aaKnown RBP9.7□□□□□ -0.86
VPS53-220ENST00000576149 IQCCQ4KMZ1 466 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 PDE12Q6L8Q7 609 aaKnown RBP9.7□□□□□ -0.86
VPS53-220ENST00000576149 TRIM73Q86UV7 250 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 HORMAD1Q86X24 394 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 ZNF547Q8IVP9 402 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 LRRC56Q8IYG6 542 aaPredicted RBP9.7□□□□□ -0.86
VPS53-220ENST00000576149 SETD9Q8NE22 299 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 OR9A1PQ8NGU1 263 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 RAB2BQ8WUD1 216 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 OR8D1Q8WZ84 308 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 THAP11Q96EK4 314 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 C7orf34Q96L11 122 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 CENPOQ9BU64 300 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 EFCAB11Q9BUY7 163 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 BHLHE41Q9C0J9 482 aaPredicted RBP9.7□□□□□ -0.86
VPS53-220ENST00000576149 EHD1Q9H4M9 534 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 PLGRKTQ9HBL7 147 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 TRIM39Q9HCM9 518 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 PRM3Q9NNZ6 103 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 EXD2Q9NVH0 621 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 PAK1IP1Q9NWT1 392 aaPredicted RBP9.7□□□□□ -0.86
VPS53-220ENST00000576149 SH3BP4Q9P0V3 963 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 ZNF282Q9UDV7 671 aaPredicted RBP9.7□□□□□ -0.86
VPS53-220ENST00000576149 VPS4AQ9UN37 437 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 SAMHD1Q9Y3Z3 626 aaKnown RBP9.7□□□□□ -0.86
VPS53-220ENST00000576149 DYRK1BQ9Y463 629 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 AP1M2Q9Y6Q5 423 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 HSPE1-MOB4S4R3N1 261 aa9.7□□□□□ -0.86
VPS53-220ENST00000576149 EDDM13A0A1B0GTR0 161 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 C17orf113A0A1B0GUU1 675 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 PIPSLA2A3N6 862 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 JRKO75564 520 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 PAPLNO95428 1278 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 C6P13671 934 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 ZNF8P17098 575 aaPredicted RBP9.69□□□□□ -0.86
VPS53-220ENST00000576149 CCNA2P20248 432 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 CD247P20963 164 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 VIPR2P41587 438 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 SLC6A11P48066 632 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 CLK3P49761 638 aaKnown RBP9.69□□□□□ -0.86
VPS53-220ENST00000576149 ENTPD1P49961 510 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 PLA2G16P53816 162 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 IL5RAQ01344 420 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 PIGFQ07326 219 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 DPTQ07507 201 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 ZNF763Q0D2J5 394 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 STARD3Q14849 445 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 ZNF385BQ569K4 471 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 PAGE2BQ5JRK9 111 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 RAET1GQ6H3X3 334 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 CROCCP3Q8IVE0 287 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 BPIFB6Q8NFQ5 453 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 OR4A15Q8NGL6 344 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 GOT1L1Q8NHS2 421 aaPredicted RBP9.69□□□□□ -0.86
VPS53-220ENST00000576149 CNIH3Q8TBE1 160 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 MUL1Q969V5 352 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 ZNF514Q96K75 400 aaPredicted RBP9.69□□□□□ -0.86
VPS53-220ENST00000576149 NODALQ96S42 347 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 RIBC2Q9H4K1 309 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 REEP4Q9H6H4 257 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 GPN2Q9H9Y4 310 aaPredicted RBP9.69□□□□□ -0.86
VPS53-220ENST00000576149 DMRT3Q9NQL9 472 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 ITM2CQ9NQX7 267 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 IRAK4Q9NWZ3 460 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 PDP1Q9P0J1 537 aaPredicted RBP9.69□□□□□ -0.86
VPS53-220ENST00000576149 N6AMT1Q9Y5N5 214 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 SNX5Q9Y5X3 404 aa9.69□□□□□ -0.86
VPS53-220ENST00000576149 TMEM229AB2RXF0 380 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 MMP20O60882 483 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 POP7O75817 140 aaKnown RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 DNAJB5O75953 348 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 POU2F2P09086 479 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 ADRB3P13945 408 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 ITIH1P19827 911 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 PCMT1P22061 227 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 ACADLP28330 430 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 PCGF2P35227 344 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 MVDP53602 400 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 KCNJ10P78508 379 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 TSTA3Q13630 321 aaPredicted RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 FNDC3BQ53EP0 1204 aaKnown RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 TMEM240Q5SV17 173 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.68□□□□□ -0.86
VPS53-220ENST00000576149 COMMD6Q7Z4G1 85 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 TRMT11Q7Z4G4 463 aaKnown RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 SPRED2Q7Z698 418 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 NAGSQ8N159 534 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 LMNTD1Q8N9Z9 388 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 C11orf65Q8NCR3 313 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 TBC1D15Q8TC07 691 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 SLC5A11Q8WWX8 675 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 MAL2Q969L2 176 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 TPD52L3Q96J77 140 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 FAM129BQ96TA1 746 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 REEP1Q9H902 201 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 FAF1Q9UNN5 650 aaPredicted RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 GPR34Q9UPC5 381 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 PCDHGB1Q9Y5G3 927 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms