RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PDE10AQ9Y233 779 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 NCKAP5O14513 1909 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 AKAP6Q13023 2319 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 GOLGA6L10A0A0M3HER8 536 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 MAGEB16A2A368 324 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 CTAGE9A4FU28 777 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ASPDHA6ND91 283 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 GOLGA6L10A6NI86 522 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ENO4A6NNW6 628 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ZNF839A8K0R7 811 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 PRSS44E7EML9 344 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 SGK494L7N484 410 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 EIF3FO00303 357 aaPredicted RBP6.33□□□□□ -1.4
VPS53-213ENST00000572334 TXNDC9O14530 226 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ZNHIT1O43257 154 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ZBTB14O43829 449 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 RDH16O75452 317 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 BANF1O75531 89 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 WFS1O76024 890 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 UNC5CO95185 931 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 RASAL1O95294 804 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 SYF2O95926 243 aaKnown RBP6.33□□□□□ -1.4
VPS53-213ENST00000572334 B3GALT4O96024 378 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ANXA5P08758 320 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ENO3P13929 434 aaPredicted RBP6.33□□□□□ -1.4
VPS53-213ENST00000572334 NPPBP16860 134 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 XCR1P46094 333 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 CDKN2DP55273 166 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 PER3P56645 1201 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 RPS15AP62244 130 aaKnown RBP6.33□□□□□ -1.4
VPS53-213ENST00000572334 ZNF33BQ06732 778 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 CKAP4Q07065 602 aaKnown RBP6.33□□□□□ -1.4
VPS53-213ENST00000572334 TUBA3CQ13748 450 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 PHKG1Q16816 387 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 C11orf91Q3C1V1 193 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 MSS51Q4VC12 460 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 HSP90AA5PQ58FG0 334 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ZNF766Q5HY98 468 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ZNF468Q5VIY5 522 aaPredicted RBP6.33□□□□□ -1.4
VPS53-213ENST00000572334 CASC4Q6P4E1 433 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 TUBA3EQ6PEY2 450 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 PAQR3Q6TCH7 311 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 GFRALQ6UXV0 394 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 UBE2R2Q712K3 238 aaPredicted RBP6.33□□□□□ -1.4
VPS53-213ENST00000572334 ADCK2Q7Z695 626 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 SLC26A11Q86WA9 606 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ZNF227Q86WZ6 799 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 CRLF3Q8IUI8 442 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 IGDCC3Q8IVU1 814 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 SIAH3Q8IW03 269 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 MCEMP1Q8IX19 187 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 C2CD4AQ8NCU7 369 aaPredicted RBP6.33□□□□□ -1.4
VPS53-213ENST00000572334 PLPP5Q8NEB5 264 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 OR4K1Q8NGD4 311 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 OR5T3Q8NGG3 340 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 DNAJB8Q8NHS0 232 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 FAM76AQ8TAV0 307 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ADAMTS18Q8TE60 1221 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 EEF1AKMT1Q8WVE0 214 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 TSLPQ969D9 159 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 RERGQ96A58 199 aaPredicted RBP6.33□□□□□ -1.4
VPS53-213ENST00000572334 SCMH1Q96GD3 660 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ANKRD27Q96NW4 1050 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 OR4K3Q96R72 315 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 NDNQ99608 321 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 WDR83Q9BRX9 315 aaKnown RBP6.33□□□□□ -1.4
VPS53-213ENST00000572334 SARGQ9BW04 601 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 PARD6BQ9BYG5 372 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 AICDAQ9GZX7 198 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.33□□□□□ -1.4
VPS53-213ENST00000572334 SPNS1Q9H2V7 528 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 STMN3Q9NZ72 180 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 SLC17A6Q9P2U8 582 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 COPG2Q9UBF2 871 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.33□□□□□ -1.4
VPS53-213ENST00000572334 FBXO5Q9UKT4 447 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 IKZF3Q9UKT9 509 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 VPS9D1Q9Y2B5 631 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ZNF835Q9Y2P0 537 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 PCDHGB6Q9Y5F9 930 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 KLF2Q9Y5W3 355 aaPredicted RBP6.33□□□□□ -1.4
VPS53-213ENST00000572334 NINQ8N4C6 2090 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 MTORP42345 2549 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 ARHGAP21Q5T5U3 1957 aa6.33□□□□□ -1.4
VPS53-213ENST00000572334 SETD2Q9BYW2 2564 aaPredicted RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 TRGV8A0A0C4DH27 118 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 A8MUI8 341 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 C4orf51C9J302 202 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 C19orf84I3L1E1 186 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 PFDN6O15212 129 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 NEURL1O76050 574 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 AHSGP02765 367 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 CYC1P08574 325 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 CCDC175P0C221 793 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 CTAGE8P0CG41 777 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 CDH1P12830 882 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ICAM2P13598 275 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 PAMP19021 973 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 HRH2P25021 359 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 IVDP26440 423 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms