RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 MED22Q15528 200 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.37□□□□□ -0.75
CCDC40-207ENST00000572253 SLC8B1Q6J4K2 584 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 ZNF544Q6NX49 715 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 SLC44A2Q8IWA5 706 aaPredicted RBP10.37□□□□□ -0.75
CCDC40-207ENST00000572253 APCDD1Q8J025 514 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 OR8H2Q8N162 312 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 OR2AP1Q8NGE2 309 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 ELMO1Q92556 727 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 Q96MT0 163 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 CASD1Q96PB1 797 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 TSEN34Q9BSV6 310 aaKnown RBP10.37□□□□□ -0.75
CCDC40-207ENST00000572253 CCDC32Q9BV29 185 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 HOXD1Q9GZZ0 328 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 BRD9Q9H8M2 597 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 SGK2Q9HBY8 427 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 NEK6Q9HC98 313 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 EXOSC4Q9NPD3 245 aaKnown RBP10.37□□□□□ -0.75
CCDC40-207ENST00000572253 DDX28Q9NUL7 540 aaKnown RBP10.37□□□□□ -0.75
CCDC40-207ENST00000572253 FKBP14Q9NWM8 211 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 STOML2Q9UJZ1 356 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 TBKBP1A7MCY6 615 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 AGAP14A8MT82 685 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 DSCR3O14972 297 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 SEMG2Q02383 582 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 CDKN3Q16667 212 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 MICAQ29983 383 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 TOR1AIP1Q5JTV8 583 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 TAS1R1Q7RTX1 841 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 IFNL1Q8IU54 200 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 TAGAPQ8N103 731 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 C1orf52Q8N6N3 182 aaKnown RBP10.37□□□□□ -0.75
CCDC40-207ENST00000572253 MAL2Q969L2 176 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 TMCO6Q96DC7 493 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 P2RY13Q9BPV8 354 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 MAPKAP1Q9BPZ7 522 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 NDUFAF4Q9P032 175 aa10.37□□□□□ -0.75
CCDC40-207ENST00000572253 ZNF197O14709 1029 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 PTHP01270 115 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 ATP1B2P14415 290 aaPredicted RBP10.36□□□□□ -0.75
CCDC40-207ENST00000572253 PTPN2P17706 415 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 SLC15A1P46059 708 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 COPZ1P61923 177 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 EXOC3L2Q2M3D2 409 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 HKDC1Q2TB90 917 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 FAM124AQ86V42 546 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 THOC6Q86W42 341 aaKnown RBP10.36□□□□□ -0.75
CCDC40-207ENST00000572253 NAGSQ8N159 534 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 RNF175Q8N4F7 328 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 FLCNQ8NFG4 579 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 ASZ1Q8WWH4 475 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 LYSMD1Q96S90 227 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 TCF25Q9BQ70 676 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 EMILIN2Q9BXX0 1053 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 MIR1-1HGQ9H1L0 117 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 MS4A12Q9NXJ0 267 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 PCDHGA2Q9Y5H1 932 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 FAM47E-STBD1D6RA91 191 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 KIAA0513O60268 411 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 C1QCP02747 245 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 OPN1SWP03999 348 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 OR2B6P58173 313 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 ZXDBP98169 803 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 RBBP4Q09028 425 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 ELOAQ14241 798 aaKnown RBP10.36□□□□□ -0.75
CCDC40-207ENST00000572253 SPIN4Q56A73 249 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 AGAP6Q5VW22 663 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.36□□□□□ -0.75
CCDC40-207ENST00000572253 HS6ST3Q8IZP7 471 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 ALG14Q96F25 216 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 SCRN2Q96FV2 425 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 MED8Q96G25 268 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 AGAP4Q96P64 663 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 SLC30A2Q9BRI3 323 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 CCM2Q9BSQ5 444 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 YIPF2Q9BWQ6 316 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 SIAEQ9HAT2 523 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 HCN4Q9Y3Q4 1203 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 SNX8Q9Y5X2 465 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 SH3D21A4FU49 640 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 GABRR3A8MPY1 467 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 A8MU76 341 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 GFYI3L273 518 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 CCRL2O00421 344 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 SPNP16150 400 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 NR4A2P43354 598 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 ALDH9A1P49189 494 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 ACLYP53396 1101 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 SCARB2Q14108 478 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 DOC2AQ14183 400 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 SF3B4Q15427 424 aaKnown RBP eCLIP10.36□□□□□ -0.75
CCDC40-207ENST00000572253 TSTQ16762 297 aaKnown RBP10.36□□□□□ -0.75
CCDC40-207ENST00000572253 SYTL3Q4VX76 610 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 TRIM40Q6P9F5 258 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 PRR23CQ6ZRP0 262 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 PTCHD4Q6ZW05 846 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 GPR155Q7Z3F1 870 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 NPAS4Q8IUM7 802 aa10.36□□□□□ -0.75
CCDC40-207ENST00000572253 MMAAQ8IVH4 418 aaKnown RBP10.36□□□□□ -0.75
CCDC40-207ENST00000572253 WFDC5Q8TCV5 224 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms