RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CD83Q01151 205 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 C2orf80Q0P641 193 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 TMPRSS11AQ6ZMR5 421 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 ZNF852Q6ZMS4 543 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 NRARPQ7Z6K4 114 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 B3GNT7Q8NFL0 401 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 FCGR1BQ92637 280 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 SLC35A5Q9BS91 424 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 SMG9Q9H0W8 520 aaKnown RBP13.97□□□□□ -0.17
VPS35-210ENST00000568784 MBD1Q9UIS9 605 aaPredicted RBP13.97□□□□□ -0.17
VPS35-210ENST00000568784 SLC6A14Q9UN76 642 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 Q9Y3F1 56 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 ANKDD1BA6NHY2 528 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 TRIM64BA6NI03 449 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 H3BNC9 293 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 WWP2O00308 870 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 EOMESO95936 686 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 IGLV3-27P01718 113 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 ADORA3P0DMS8 318 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 DSC1Q08554 894 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 DOC2AQ14183 400 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 CBLL1Q75N03 491 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 CITED4Q96RK1 184 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 ZDHHC3Q9NYG2 299 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 IFT52Q9Y366 437 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 RALGAPA2Q2PPJ7 1873 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 M0R082 166 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 PCDH17O14917 1159 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 F11P03951 625 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 CRHR2Q13324 411 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 KRR1Q13601 381 aaKnown RBP13.96□□□□□ -0.17
VPS35-210ENST00000568784 SCARB2Q14108 478 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 ZNF181Q2M3W8 571 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 PDZK1Q5T2W1 519 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 GDPD3Q7L5L3 318 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 NPAS3Q8IXF0 933 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 USP7Q93009 1102 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 SLC30A2Q9BRI3 323 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 MMP28Q9H239 520 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 RUVBL1Q9Y265 456 aaKnown RBP13.96□□□□□ -0.17
VPS35-210ENST00000568784 PCDHB11Q9Y5F2 797 aa13.96□□□□□ -0.17
VPS35-210ENST00000568784 SEPT4O43236 478 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 SSTR4P31391 388 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 RGS6P49758 472 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 ATN1P54259 1190 aaPredicted RBP13.96□□□□□ -0.18
VPS35-210ENST00000568784 CXCR4P61073 352 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 RPS13P62277 151 aaKnown RBP13.96□□□□□ -0.18
VPS35-210ENST00000568784 PRKCZQ05513 592 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 COX20Q5RI15 118 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 BCDIN3DQ7Z5W3 292 aaKnown RBP13.96□□□□□ -0.18
VPS35-210ENST00000568784 RNF130Q86XS8 419 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 ZNF366Q8N895 744 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 DOHHQ9BU89 302 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 CDADC1Q9BWV3 514 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 ASPNQ9BXN1 380 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 UGT2A1Q9Y4X1 527 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 PLXNB2O15031 1838 aa13.96□□□□□ -0.18
VPS35-210ENST00000568784 GLTPD2A6NH11 291 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 GABRR3A8MPY1 467 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 JUNDP17535 347 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 ITGA1P56199 1179 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 RACK1P63244 317 aaKnown RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 CASP12Q6UXS9 341 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 RNF180Q86T96 592 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 THOC6Q86W42 341 aaKnown RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 CALHM3Q86XJ0 350 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 PTOV1Q86YD1 416 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 CMTM8Q8IZV2 173 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 DNAJC22Q8N4W6 341 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 LILRA3Q8N6C8 439 aaPredicted RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 C7orf57Q8NEG2 295 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 OTUB1Q96FW1 271 aaPredicted RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 NEDD4LQ96PU5 975 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 TBC1D14Q9P2M4 693 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 PCDHGA3Q9Y5H0 932 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 TMEM88BA6NKF7 163 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 AOAHP28039 575 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 TGFBR2P37173 567 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 CTSOP43234 321 aaPredicted RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 TIMM50Q3ZCQ8 353 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 LRIF1Q5T3J3 769 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 GCNT6Q5T4J0 391 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 ZNF517Q6ZMY9 492 aaPredicted RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 SERPINA11Q86U17 422 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 RAB43Q86YS6 212 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 CLP1Q92989 425 aaKnown RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 POLR2J2Q9GZM3 115 aaKnown RBP13.95□□□□□ -0.18
VPS35-210ENST00000568784 QPCTLQ9NXS2 382 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 OSGIN1Q9UJX0 560 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 LYVE1Q9Y5Y7 322 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 CLDN24A6NM45 220 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 MYL12BO14950 172 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 CDK1P06493 297 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 GSTM1P09488 218 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 HLA-EP13747 358 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 CNR2P34972 360 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 RAB25P57735 213 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 GAB1Q13480 694 aa13.95□□□□□ -0.18
VPS35-210ENST00000568784 TBRG1Q3YBR2 411 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms