RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 USP9YO00507 2555 aaPredicted RBP14.24□□□□□ -0.13
VPS39-210ENST00000568357 SPENQ96T58 3664 aaKnown RBP14.23□□□□□ -0.13
VPS39-210ENST00000568357 BLACEA4D250 179 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 IDSB3KWA1 339 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 JRKO75564 520 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 STK16O75716 305 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 BMP10O95393 424 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 B3GALT4O96024 378 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 ALDOAP04075 364 aaKnown RBP14.23□□□□□ -0.13
VPS39-210ENST00000568357 RHOXF2BP0C7M4 288 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 SLC35G6P0C7Q6 338 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 C1GALT1C1LP0DN25 315 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 GNAZP19086 355 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 AHRP35869 848 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 CASRP41180 1078 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 HSPA7P48741 367 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 HYAL2Q12891 473 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 CDC16Q13042 620 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 RBBP5Q15291 538 aaKnown RBP14.23□□□□□ -0.13
VPS39-210ENST00000568357 IGFBP7Q16270 282 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 NADK2Q4G0N4 442 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 FAAH2Q6GMR7 532 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 TBC1D1Q86TI0 1168 aaPredicted RBP14.23□□□□□ -0.13
VPS39-210ENST00000568357 IFT20Q8IY31 132 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 CENPLQ8N0S6 344 aaPredicted RBP14.23□□□□□ -0.13
VPS39-210ENST00000568357 TCAIMQ8N3R3 496 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 AFAP1L2Q8N4X5 818 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 TBC1D19Q8N5T2 526 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 PDPRQ8NCN5 879 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 OR51Q1Q8NH59 317 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 UHMK1Q8TAS1 419 aaKnown RBP14.23□□□□□ -0.13
VPS39-210ENST00000568357 NT5CQ8TCD5 201 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 CREB3L4Q8TEY5 395 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 KCTD4Q8WVF5 259 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 SLC44A1Q8WWI5 657 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 EXT2Q93063 718 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 ATOH8Q96SQ7 321 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 SMAD5Q99717 465 aaKnown RBP14.23□□□□□ -0.13
VPS39-210ENST00000568357 AIF1LQ9BQI0 150 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 RHOXF2Q9BQY4 288 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 ZNF552Q9H707 407 aaPredicted RBP14.23□□□□□ -0.13
VPS39-210ENST00000568357 ANKHQ9HCJ1 492 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 WWOXQ9NZC7 414 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 HCN3Q9P1Z3 774 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 NAALAD2Q9Y3Q0 740 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 ZNF451Q9Y4E5 1061 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 ASB1Q9Y576 335 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 CCDC88CQ9P219 2028 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 MED13Q9UHV7 2174 aa14.23□□□□□ -0.13
VPS39-210ENST00000568357 A0A087X1B8 175 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 A0A096LPK6 155 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 OR2W5A6NFC9 320 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 H2AFYO75367 372 aaKnown RBP14.22□□□□□ -0.13
VPS39-210ENST00000568357 RDH16O75452 317 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 KLHL18O94889 574 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 HEXBP07686 556 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 EPORP19235 508 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 Q0VFX4 171 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 AIMP2Q13155 320 aaKnown RBP14.22□□□□□ -0.13
VPS39-210ENST00000568357 MYBPC3Q14896 1274 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 TUBB8Q3ZCM7 444 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 PARP9Q8IXQ6 854 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 AMER2Q8N7J2 671 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 OR5T3Q8NGG3 340 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 GPR78Q96P69 363 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 CAPS2Q9BXY5 557 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 AICDAQ9GZX7 198 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 KLHL31Q9H511 634 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 CNOT10Q9H9A5 744 aaKnown RBP14.22□□□□□ -0.13
VPS39-210ENST00000568357 DNAJC11Q9NVH1 559 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 C14orf105Q9NVL8 296 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 MKL2Q9ULH7 1088 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 PCDHGB7Q9Y5F8 929 aa14.22□□□□□ -0.13
VPS39-210ENST00000568357 ANKRD12Q6UB98 2062 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 ZNF860A6NHJ4 632 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 UBXN8O00124 270 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 MAP2K7O14733 419 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 GALR3O60755 368 aaPredicted RBP14.21□□□□□ -0.13
VPS39-210ENST00000568357 KERAO60938 352 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 IPO13O94829 963 aaKnown RBP14.21□□□□□ -0.13
VPS39-210ENST00000568357 FAM153BP0C7A2 387 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 MTHFD2P13995 350 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 ACPPP15309 386 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 ALOX12P18054 663 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 ITGA3P26006 1051 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 TYK2P29597 1187 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 HNF4AP41235 474 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 XCR1P46094 333 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 GLRBP48167 497 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 AGTR2P50052 363 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 FOXK1P85037 733 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 RGS1Q08116 209 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 SLBPQ14493 270 aaKnown RBP eCLIP14.21□□□□□ -0.13
VPS39-210ENST00000568357 HERC3Q15034 1050 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 FAM153CQ494X1 144 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 DEFB134Q4QY38 66 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 TMIGD1Q6UXZ0 262 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 RBMXL3Q8N7X1 1067 aaKnown RBP14.21□□□□□ -0.13
VPS39-210ENST00000568357 SNX31Q8N9S9 440 aa14.21□□□□□ -0.13
VPS39-210ENST00000568357 UTP15Q8TED0 518 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms