RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PRAMEF4O60810 478 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 B3GALT4O96024 378 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 C8orf89P0DMQ9 161 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 ITGAMP11215 1152 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 GRK3P35626 688 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 XCR1P46094 333 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 GLRBP48167 497 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 POU4F1Q01851 419 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 CSHL1Q14406 222 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 TLR1Q15399 786 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 NR6A1Q15406 480 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 ZKSCAN8Q15776 578 aaPredicted RBP14.03□□□□□ -0.16
CLN3-213ENST00000565047 C18orf21Q32NC0 220 aaPredicted RBP14.03□□□□□ -0.16
CLN3-213ENST00000565047 FHL5Q5TD97 284 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 PRAMEF9Q5VWM5 478 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 H3F3CQ6NXT2 135 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 NXPE4Q6UWF7 544 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 SYT10Q6XYQ8 523 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 CPEB2Q7Z5Q1 589 aaKnown RBP14.03□□□□□ -0.16
CLN3-213ENST00000565047 ANKRD37Q7Z713 158 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 PLPP5Q8NEB5 264 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 ZCCHC10Q8TBK6 192 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 FBXO25Q8TCJ0 367 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 UTP15Q8TED0 518 aaKnown RBP14.03□□□□□ -0.16
CLN3-213ENST00000565047 CREB3L4Q8TEY5 395 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 UBXN10Q96LJ8 280 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 GPR22Q99680 433 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 TUBB6Q9BUF5 446 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 DERL2Q9GZP9 239 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 EPS8L2Q9H6S3 715 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 CAB39LQ9H9S4 337 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 PELI2Q9HAT8 420 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 ANKHQ9HCJ1 492 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 PTGFRNQ9P2B2 879 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 COPG2Q9UBF2 871 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 ESPL1Q14674 2120 aa14.02□□□□□ -0.16
CLN3-213ENST00000565047 IGHV3-20A0A0C4DH32 117 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 TAPBPO15533 448 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 NDUFS4O43181 175 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 TBX6O95947 436 aaPredicted RBP14.02□□□□□ -0.17
CLN3-213ENST00000565047 SLC35G6P0C7Q6 338 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 GP1BBP13224 206 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 ALOX12P18054 663 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 IL10P22301 178 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 CASQ1P31415 396 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 GGT5P36269 586 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 GDF5P43026 501 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 HNMTP50135 292 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 TNFSF10P50591 281 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 ILF2Q12905 390 aaKnown RBP14.02□□□□□ -0.17
CLN3-213ENST00000565047 CALCOCO2Q13137 446 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 HERC3Q15034 1050 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 TGFBIQ15582 683 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 IRAK1BP1Q5VVH5 260 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 ZNF324BQ6AW86 544 aaPredicted RBP14.02□□□□□ -0.17
CLN3-213ENST00000565047 PLAG1Q6DJT9 500 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 SLCO4C1Q6ZQN7 724 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 CAPN12Q6ZSI9 719 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 C3orf62Q6ZUJ4 267 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 SPATA6LQ8N4H0 392 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 SIRT6Q8N6T7 355 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 TSNARE1Q96NA8 513 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 OR1F2PQ96R84 312 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 RBBP8Q99708 897 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 CPNE1Q99829 537 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 KLHL31Q9H511 634 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 LRRC4CQ9HCJ2 640 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 GPAMQ9HCL2 828 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 PLA2G3Q9NZ20 509 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 CTNNAL1Q9UBT7 734 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 RP1L1Q8IWN7 2480 aaPredicted RBP14.02□□□□□ -0.17
CLN3-213ENST00000565047 SCN3AQ9NY46 2000 aa14.02□□□□□ -0.17
CLN3-213ENST00000565047 CPAMD8Q8IZJ3 1885 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 HIVEP3Q5T1R4 2406 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 ZNF860A6NHJ4 632 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 GSTA2P09210 222 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 ICAM2P13598 275 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 CD1DP15813 335 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 KCNC1P48547 511 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 ADAMTSL2Q86TH1 951 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 GRHL3Q8TE85 626 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 FAR1Q8WVX9 515 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 PEX11GQ96HA9 241 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 NPAS2Q99743 824 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 TMEM79Q9BSE2 394 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 SLC29A3Q9BZD2 475 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 UNKQ9C0B0 810 aaKnown RBP14.01□□□□□ -0.17
CLN3-213ENST00000565047 RNF32Q9H0A6 362 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 KCNE2Q9Y6J6 123 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 CNTRLQ7Z7A1 2325 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 POLEQ07864 2286 aa14.01□□□□□ -0.17
CLN3-213ENST00000565047 MAGEB17A8MXT2 336 aa14□□□□□ -0.17
CLN3-213ENST00000565047 PHGDHO43175 533 aaKnown RBP14□□□□□ -0.17
CLN3-213ENST00000565047 CHST10O43529 356 aa14□□□□□ -0.17
CLN3-213ENST00000565047 FAM155BO75949 473 aa14□□□□□ -0.17
CLN3-213ENST00000565047 SEC24DO94855 1032 aaPredicted RBP14□□□□□ -0.17
CLN3-213ENST00000565047 WDPCPO95876 746 aa14□□□□□ -0.17
CLN3-213ENST00000565047 ZNF888P0CJ79 500 aaPredicted RBP14□□□□□ -0.17
CLN3-213ENST00000565047 CCDC166P0CW27 439 aa14□□□□□ -0.17
CLN3-213ENST00000565047 C1GALT1C1LP0DN25 315 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms