RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PNLIPRP1P54315 467 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 EIF3BP55884 814 aaKnown RBP6.85□□□□□ -1.31
VPS4A-203ENST00000564399 COPS2P61201 443 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 ABATP80404 500 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 RHAGQ02094 409 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 RELAQ04206 551 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 CDH17Q12864 832 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 ARHGAP19Q14CB8 494 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 IQCB1Q15051 598 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 P3H1Q32P28 736 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 SLC25A35Q3KQZ1 300 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 B3GNT6Q6ZMB0 384 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 PPP1R21Q6ZMI0 780 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 CHSY3Q70JA7 882 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 LIX1LQ8IVB5 337 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 KLHDC8BQ8IXV7 354 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 CYP4Z2PQ8N1L4 340 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 OTUD6BQ8N6M0 293 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 FAM71DQ8N9W8 422 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 ZFP62Q8NB50 900 aaPredicted RBP6.85□□□□□ -1.31
VPS4A-203ENST00000564399 PPFIBP2Q8ND30 876 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 ZNF778Q96MU6 729 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 PRAP1Q96NZ9 151 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 SMC6Q96SB8 1091 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 CHP1Q99653 195 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 EBNA1BP2Q99848 306 aaKnown RBP6.85□□□□□ -1.31
VPS4A-203ENST00000564399 OSBPL8Q9BZF1 889 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 ATG10Q9H0Y0 220 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 TRIM45Q9H8W5 580 aaPredicted RBP6.85□□□□□ -1.31
VPS4A-203ENST00000564399 TIMMDC1Q9NPL8 285 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 DMRT3Q9NQL9 472 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 FAM114A2Q9NRY5 505 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 PLSCR2Q9NRY7 297 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 CATSPERZQ9NTU4 200 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 ALKBH4Q9NXW9 302 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 ERVK-11Q9UQG0 969 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 A0A0G2JNJ9 132 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 ZNF860A6NHJ4 632 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 A8MUA0 341 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 GOLGA6L22H0YM25 854 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 ACOT7O00154 380 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 MYO1CO00159 1063 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 SMAPO00193 183 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 BCKDKO14874 412 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 SLC16A5O15375 505 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 CD3EAPO15446 510 aaKnown RBP6.84□□□□□ -1.31
VPS4A-203ENST00000564399 B4GALT2O60909 372 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 ATE1O95260 518 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 MATN4O95460 622 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 SYF2O95926 243 aaKnown RBP6.84□□□□□ -1.31
VPS4A-203ENST00000564399 CATP04040 527 aaKnown RBP6.84□□□□□ -1.31
VPS4A-203ENST00000564399 TUBB4AP04350 444 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 PTMAP06454 111 aaKnown RBP6.84□□□□□ -1.31
VPS4A-203ENST00000564399 GLI4P10075 376 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 ERGP11308 486 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 IL10P22301 178 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 ADRA1DP25100 572 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 HOXC12P31275 282 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 HSD17B2P37059 387 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 RPS15AP62244 130 aaKnown RBP6.84□□□□□ -1.31
VPS4A-203ENST00000564399 PPIAP62937 165 aaKnown RBP6.84□□□□□ -1.31
VPS4A-203ENST00000564399 NKX6-1P78426 367 aaPredicted RBP6.84□□□□□ -1.31
VPS4A-203ENST00000564399 PPP2R2BQ00005 443 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 MPP1Q00013 466 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 TCEAL1Q15170 157 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 TYSND1Q2T9J0 566 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 FLYWCH1Q4VC44 716 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.84□□□□□ -1.31
VPS4A-203ENST00000564399 MDGA2Q7Z553 956 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 VN1R4Q7Z5H5 301 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 PCGF5Q86SE9 256 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 KCT2Q8NC54 265 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 CAMKVQ8NCB2 501 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 CREB3L4Q8TEY5 395 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 FAM222BQ8WU58 562 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 FAM136AQ96C01 138 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 LRRC46Q96FV0 321 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 PTCHD1Q96NR3 888 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 OR1F2PQ96R84 312 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 PKP4Q99569 1192 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 DNAJC7Q99615 494 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 SARGQ9BW04 601 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 NHEJ1Q9H9Q4 299 aaPredicted RBP6.84□□□□□ -1.31
VPS4A-203ENST00000564399 LANCL2Q9NS86 450 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 IFNKQ9P0W0 207 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 MARCH4Q9P2E8 410 aaPredicted RBP6.84□□□□□ -1.31
VPS4A-203ENST00000564399 Q9UFV3 132 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 FBXW2Q9UKT8 454 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 ACAD8Q9UKU7 415 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 INTUQ9ULD6 942 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 RIMKLBQ9ULI2 386 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 EFR3BQ9Y2G0 817 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 NAALAD2Q9Y3Q0 740 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 FAM215AQ9Y5M1 114 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 GTF3C3Q9Y5Q9 886 aa6.84□□□□□ -1.31
VPS4A-203ENST00000564399 ROS1P08922 2347 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 CHD3Q12873 2000 aaKnown RBP6.83□□□□□ -1.32
VPS4A-203ENST00000564399 OR14I1A6ND48 311 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 GOLGA6L9A6NEM1 432 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 FAM47E-STBD1D6RA91 191 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms