RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 USP10Q14694 798 aaKnown RBP15.86■□□□□ 0.13
CLN3-211ENST00000564091 PHKG1Q16816 387 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 XKRXQ6PP77 449 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 PAQR3Q6TCH7 311 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 NCCRP1Q6ZVX7 275 aaPredicted RBP15.86■□□□□ 0.13
CLN3-211ENST00000564091 GALNTL5Q7Z4T8 443 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.86■□□□□ 0.13
CLN3-211ENST00000564091 SPPL2CQ8IUH8 684 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 LMNTD2Q8IXW0 634 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 SLC5A8Q8N695 610 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 MFSD9Q8NBP5 474 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 CALML6Q8TD86 181 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 THAP3Q8WTV1 239 aaPredicted RBP15.86■□□□□ 0.13
CLN3-211ENST00000564091 MS4A14Q96JA4 679 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 LURAP1Q96LR2 239 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 SGPP1Q9BX95 441 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 CDCP1Q9H5V8 836 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 PARVBQ9HBI1 364 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 ZNF835Q9Y2P0 537 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 SLC22A7Q9Y694 548 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 ANKRD17O75179 2603 aaKnown RBP15.86■□□□□ 0.13
CLN3-211ENST00000564091 ADGRG4Q8IZF6 3080 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 PDZD2O15018 2839 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 PKDREJQ9NTG1 2253 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 C19orf84I3L1E1 186 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 NEURL1O76050 574 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 C8GP07360 202 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 SLC35G6P0C7Q6 338 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 GABRB3P28472 473 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 RGS4P49798 205 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 OR4D2P58180 307 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 KRTCAP3Q53RY4 240 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 ZNF468Q5VIY5 522 aaPredicted RBP15.85■□□□□ 0.13
CLN3-211ENST00000564091 SLC25A25Q6KCM7 469 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 LCTLQ6UWM7 567 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 PALM2Q8IXS6 379 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 KIF2BQ8N4N8 673 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 AFAP1L2Q8N4X5 818 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 NAT8LQ8N9F0 302 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.85■□□□□ 0.13
CLN3-211ENST00000564091 ZNF740Q8NDX6 193 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 PYCR2Q96C36 320 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 FRMD6Q96NE9 622 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 FAM167BQ9BTA0 163 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 TRIM8Q9BZR9 551 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 NEU2Q9Y3R4 380 aa15.85■□□□□ 0.13
CLN3-211ENST00000564091 TACC2O95359 2948 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 MAGEB17A8MXT2 336 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 NDC80O14777 642 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 NDUFS4O43181 175 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 OR1F1O43749 312 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 SERPIND1P05546 499 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 FHP07954 510 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 SP1P08047 785 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 SMSP52788 366 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 PGGT1BP53609 377 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 CDKN2DP55273 166 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 SLC26A5P58743 744 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 HSF1Q00613 529 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 HERC3Q15034 1050 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 DEFB134Q4QY38 66 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 RBM20Q5T481 1227 aaKnown RBP15.84■□□□□ 0.13
CLN3-211ENST00000564091 LRRC8EQ6NSJ5 796 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 UGT3A1Q6NUS8 523 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 Q6ZPB1 254 aaPredicted RBP15.84■□□□□ 0.13
CLN3-211ENST00000564091 SIAH3Q8IW03 269 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 ZNF295-AS1Q8N0V1 137 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 MYO1HQ8N1T3 1032 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 TMEM178AQ8NBL3 297 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 C2CD4AQ8NCU7 369 aaPredicted RBP15.84■□□□□ 0.13
CLN3-211ENST00000564091 ABHD11Q8NFV4 315 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 TBC1D20Q96BZ9 403 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 LINGO1Q96FE5 620 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 OR1F2PQ96R84 312 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 FAM129AQ9BZQ8 928 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 TAS2R13Q9NYV9 303 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 LRFN1Q9P244 771 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 MEMO1Q9Y316 297 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 DCHS2Q6V1P9 2916 aa15.84■□□□□ 0.13
CLN3-211ENST00000564091 SLC16A5O15375 505 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 CHST10O43529 356 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 ASNA1O43681 348 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 GALR3O60755 368 aaPredicted RBP15.83■□□□□ 0.12
CLN3-211ENST00000564091 B4GALT2O60909 372 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 MLYCDO95822 493 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 HIST1H2AGP0C0S8 130 aaPredicted RBP15.83■□□□□ 0.12
CLN3-211ENST00000564091 HIST1H2ADP20671 130 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 IL10P22301 178 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 CCND1P24385 295 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 KIR3DL1P43629 444 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 CCR8P51685 355 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 TAS2R50P59544 299 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 DHX9Q08211 1270 aaKnown RBP15.83■□□□□ 0.12
CLN3-211ENST00000564091 SP140Q13342 867 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 MAPKAPK3Q16644 382 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 CATSPEREQ5SY80 951 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 CCDC137Q6PK04 289 aaKnown RBP15.83■□□□□ 0.12
CLN3-211ENST00000564091 RPS19BP1Q86WX3 136 aaKnown RBP15.83■□□□□ 0.12
CLN3-211ENST00000564091 CYP4X1Q8N118 509 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 RASGEF1CQ8N431 466 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms