RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PLPPR4Q7Z2D5 763 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 AMZ2Q86W34 360 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 ZBED8Q8IZ13 594 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 OFCC1Q8IZS5 231 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 DSELQ8IZU8 1212 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 CYP4Z2PQ8N1L4 340 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 ARHGAP24Q8N264 748 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 SIRT6Q8N6T7 355 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 LRRC17Q8N6Y2 441 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 LEMD2Q8NC56 503 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 OR4D10Q8NGI6 311 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 CYP2W1Q8TAV3 490 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 PYROXD1Q8WU10 500 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 RLN3Q8WXF3 142 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 ESR2Q92731 530 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 CD101Q93033 1021 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 CPNE4Q96A23 557 aaPredicted RBP4.91□□□□□ -1.62
VPS35-205ENST00000563984 STAMBPL1Q96FJ0 436 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 SAMD8Q96LT4 415 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 SNX18Q96RF0 628 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 TAAR1Q96RJ0 339 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 APOL2Q9BQE5 337 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 TUBGCP2Q9BSJ2 902 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 C1QTNF7Q9BXJ2 289 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 IDI2Q9BXS1 227 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 ZMYND12Q9H0C1 365 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 ALX4Q9H161 411 aaPredicted RBP4.91□□□□□ -1.62
VPS35-205ENST00000563984 METTL7AQ9H8H3 244 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 COG4Q9H9E3 785 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 FOLH1BQ9HBA9 442 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 S100A14Q9HCY8 104 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 CHMP1AQ9HD42 196 aaPredicted RBP4.91□□□□□ -1.62
VPS35-205ENST00000563984 CD209Q9NNX6 404 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 ASCL3Q9NQ33 180 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.91□□□□□ -1.62
VPS35-205ENST00000563984 ARL8BQ9NVJ2 186 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 TAS2R1Q9NYW7 299 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 TFCP2L1Q9NZI6 479 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 UVRAGQ9P2Y5 699 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 DNMT3BQ9UBC3 853 aaKnown RBP4.91□□□□□ -1.62
VPS35-205ENST00000563984 SLC24A2Q9UI40 661 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 USP22Q9UPT9 525 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 ACOT9Q9Y305 439 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 AAR2Q9Y312 384 aaKnown RBP4.91□□□□□ -1.62
VPS35-205ENST00000563984 HYOU1Q9Y4L1 999 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 FKBP7Q9Y680 259 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 AQRO60306 1485 aaKnown RBP eCLIP4.91□□□□□ -1.622e-7■■■■■ 29
VPS35-205ENST00000563984 IFT140Q96RY7 1462 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 UBE4BO95155 1302 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 A0A1W2PQ09 198 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 ESYT2A0FGR8 921 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 ARHGEF35A5YM69 484 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 TRIM49BA6NDI0 452 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 CFAP73A6NFT4 308 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 OR6C76A6NM76 312 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 ZNF729A6NN14 1252 aaPredicted RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 MEI4A8MW99 385 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 POC1B-GALNT4F8VUJ3 575 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 AP4M1O00189 453 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 PLK4O00444 970 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 ARHGEF9O43307 516 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 KCNAB3O43448 404 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 JAK2O60674 1132 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 CST8O60676 142 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 MITFO75030 526 aaPredicted RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 PMPCBO75439 489 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 MBD3O95983 291 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 A1BGP04217 495 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 IFNA6P05013 189 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 SERPINA6P08185 405 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 ACADSP16219 412 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 MSH3P20585 1137 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 ATP6V1C1P21283 382 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 TCEA1P23193 301 aaKnown RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 S100PP25815 95 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 EPHA3P29320 983 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 CRABP1P29762 137 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 TM4SF1P30408 202 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 CHRNA5P30532 468 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 GKP32189 559 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 LIG4P49917 911 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 NPY4RP50391 375 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 RASSF2P50749 326 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 CAPZA1P52907 286 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 NME5P56597 212 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 KIAA1024LP59773 190 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 SUMO2P61956 95 aaKnown RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 SSBP2P81877 361 aaPredicted RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 E2F1Q01094 437 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 FMO1Q01740 532 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 TGM3Q08188 693 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 TUBB2AQ13885 445 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 DRAP1Q14919 205 aaPredicted RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 HEPACAMQ14CZ8 416 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 TPD52L1Q16890 204 aaPredicted RBP4.9□□□□□ -1.63
VPS35-205ENST00000563984 TRIM16LQ309B1 348 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 CNPY1Q3B7I2 92 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 USP41Q3LFD5 358 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 NADK2Q4G0N4 442 aa4.9□□□□□ -1.63
VPS35-205ENST00000563984 MPPE1Q53F39 396 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms