RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 AURKBQ96GD4 344 aaPredicted RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 FCRL4Q96PJ5 515 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 ZNF607Q96SK3 696 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 SORBS1Q9BX66 1292 aaKnown RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 TBL1XR1Q9BZK7 514 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 TRIM8Q9BZR9 551 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 C4orf47A7E2U8 309 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 PATE3B3GLJ2 98 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 PRMT3O60678 531 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 OPN1SWP03999 348 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 PRKAR1AP10644 381 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 NCK1P16333 377 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 PRPS1L1P21108 318 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 ITGA3P26006 1051 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 SLC19A1P41440 591 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 CTSL3PQ5NE16 218 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 UNC5DQ6UXZ4 953 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 CCDC81Q6ZN84 652 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 FRMD7Q6ZUT3 714 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 GATSQ8NAP1 163 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 SUN3Q8TAQ9 357 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 REEP1Q9H902 201 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 POLR1BQ9H9Y6 1135 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 EXOSC4Q9NPD3 245 aaKnown RBP8.88□□□□□ -0.99
VPS39-205ENST00000562258 SLC39A1Q9NY26 324 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 ADGRE2Q9UHX3 823 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 MRTO4Q9UKD2 239 aaKnown RBP8.88□□□□□ -0.99
VPS39-205ENST00000562258 RNF215Q9Y6U7 377 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 SDK2Q58EX2 2172 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 PRAMEF33A0A0G2JMD5 474 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 STX16-NPEPL1H3BU86 382 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 K7EQS6 105 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 STX16O14662 325 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 RDH16O75452 317 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 SNUPNO95149 360 aaKnown RBP8.88□□□□□ -0.99
VPS39-205ENST00000562258 ZBTB11O95625 1053 aaPredicted RBP8.88□□□□□ -0.99
VPS39-205ENST00000562258 BCKDHBP21953 392 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 FBLP22087 321 aaKnown RBP8.88□□□□□ -0.99
VPS39-205ENST00000562258 GSTM4Q03013 218 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 RAPSNQ13702 412 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 ANGPT1Q15389 498 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 ALG11Q2TAA5 492 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 KHDRBS2Q5VWX1 349 aaKnown RBP8.88□□□□□ -0.99
VPS39-205ENST00000562258 TCEAL6Q6IPX3 200 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 PRMT9Q6P2P2 845 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 TIFABQ6ZNK6 161 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 ARL14Q8N4G2 192 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 FITM2Q8N6M3 262 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 OR7G3Q8NG95 312 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 PHF10Q8WUB8 498 aaKnown RBP8.88□□□□□ -0.99
VPS39-205ENST00000562258 TCEAL3Q969E4 200 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 DACH2Q96NX9 599 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 DEFB126Q9BYW3 111 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 FGF21Q9NSA1 209 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 SLC23A2Q9UGH3 650 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 TEKT2Q9UIF3 430 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 MROH6A6NGR9 719 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 BHMG1C9JSJ3 638 aaPredicted RBP8.88□□□□□ -0.99
VPS39-205ENST00000562258 SUV39H1O43463 412 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 OR10H3O60404 316 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 HLA-DQA2P01906 255 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 IL3P08700 152 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 TRPC1P48995 793 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 SH3BP2P78314 561 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 KPNB1Q14974 876 aaKnown RBP8.88□□□□□ -0.99
VPS39-205ENST00000562258 PARP14Q460N5 1801 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 TMEM52BQ4KMG9 183 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 C6orf136Q5SQH8 315 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 NOXRED1Q6NXP6 359 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 HPS6Q86YV9 775 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 MCATQ8IVS2 390 aaKnown RBP8.88□□□□□ -0.99
VPS39-205ENST00000562258 MICU2Q8IYU8 434 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 AGBL5Q8NDL9 886 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 RHEBL1Q8TAI7 183 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 RSC1A1Q92681 617 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 RHBDF1Q96CC6 855 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 SLC35G5Q96KT7 338 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 CRB3Q9BUF7 120 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 ALG2Q9H553 416 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 ZBTB20Q9HC78 741 aaPredicted RBP8.88□□□□□ -0.99
VPS39-205ENST00000562258 SLC40A1Q9NP59 571 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 PCDHGB3Q9Y5G1 929 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 PCDHGA2Q9Y5H1 932 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 OTOFQ9HC10 1997 aa8.88□□□□□ -0.99
VPS39-205ENST00000562258 KLHL33A6NCF5 533 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 SGK494L7N484 410 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 AREL1O15033 823 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 TGDSO95455 350 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 RNH1P13489 461 aaKnown RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 MAGEA9P43362 315 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 ABATP80404 500 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 ACY1Q03154 408 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 GRB7Q14451 532 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 HLA-BQ31612 363 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 ZIK1Q3SY52 487 aaPredicted RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 AFMIDQ63HM1 303 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 SLC29A4Q7RTT9 530 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 POMGNT2Q8NAT1 580 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 PJA1Q8NG27 643 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 FRS2Q8WU20 508 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms