RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 EMP3P54852 163 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 FOXK2Q01167 660 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 SRSF6Q13247 344 aaKnown RBP20.72■□□□□ 0.91
SNX1-210ENST00000560260 PWP1Q13610 501 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 TCHHL1Q5QJ38 904 aaPredicted RBP20.72■□□□□ 0.91
SNX1-210ENST00000560260 FAM199XQ6PEV8 388 aaPredicted RBP20.72■□□□□ 0.91
SNX1-210ENST00000560260 GPRIN3Q6ZVF9 776 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 WDR20Q8TBZ3 569 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 ZDHHC19Q8WVZ1 309 aaPredicted RBP20.72■□□□□ 0.91
SNX1-210ENST00000560260 NKD1Q969G9 470 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 NAF1Q96HR8 494 aaKnown RBP20.72■□□□□ 0.91
SNX1-210ENST00000560260 KCNA7Q96RP8 456 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 KLHL31Q9H511 634 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 SLC22A11Q9NSA0 550 aa20.72■□□□□ 0.91
SNX1-210ENST00000560260 A0A1B0GX78 115 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 HMGB1P1B2RPK0 211 aaPredicted RBP20.71■□□□□ 0.91
SNX1-210ENST00000560260 TXNDC9O14530 226 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 CLEC3AO75596 197 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 CHRNGP07510 517 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 HBQ1P09105 142 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 HPDP32754 393 aaPredicted RBP20.71■□□□□ 0.91
SNX1-210ENST00000560260 ATP1A2P50993 1020 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 ARSFP54793 590 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 DDX39BQ13838 428 aaKnown RBP20.71■□□□□ 0.91
SNX1-210ENST00000560260 HIST2H2ACQ16777 129 aaPredicted RBP20.71■□□□□ 0.91
SNX1-210ENST00000560260 MUM1Q2TAK8 710 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 TOR1AIP1Q5JTV8 583 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 CFAP157Q5JU67 520 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 YOD1Q5VVQ6 348 aaPredicted RBP20.71■□□□□ 0.91
SNX1-210ENST00000560260 GARNL3Q5VVW2 1013 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 HIST2H2AA3Q6FI13 130 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 FAM198BQ6UWH4 519 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 ZNF517Q6ZMY9 492 aaPredicted RBP20.71■□□□□ 0.91
SNX1-210ENST00000560260 COX15Q7KZN9 410 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 NUDCD3Q8IVD9 361 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 CACNA2D3Q8IZS8 1091 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 NLGN4XQ8N0W4 816 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 SHISA5Q8N114 240 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 GOLGA6L1Q8N7Z2 621 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 CDYL2Q8N8U2 506 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 TRPV3Q8NET8 790 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 NLGN4YQ8NFZ3 816 aaPredicted RBP20.71■□□□□ 0.91
SNX1-210ENST00000560260 TTLQ8NG68 377 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 HUS1BQ8NHY5 278 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 PROKR1Q8TCW9 393 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 ZCCHC14Q8WYQ9 949 aaKnown RBP20.71■□□□□ 0.91
SNX1-210ENST00000560260 UBE2E3Q969T4 207 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 MS4A8Q9BY19 250 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 NLNQ9BYT8 704 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 SHCBP1LQ9BZQ2 653 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 SLC7A5P2Q9GIP4 190 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 LHX9Q9NQ69 397 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 TXLNGQ9NUQ3 528 aa20.71■□□□□ 0.91
SNX1-210ENST00000560260 LOC101059948A0A1B0GTJ6 334 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 ANKDD1BA6NHY2 528 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 BIRC5O15392 142 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 ESRRBO95718 433 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 CAPN1P07384 714 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 SERPINA6P08185 405 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 ATXN8OSP0DMR3 200 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 IL1RNP18510 177 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 GSTM2P28161 218 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 STAT5AP42229 794 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 HTR6P50406 440 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 NEK2P51955 445 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 FOXA1P55317 472 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 PKNOX1P55347 436 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 RGS1Q08116 209 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 FAM214AQ32MH5 1076 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 PDSS2Q86YH6 399 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 AFAP1L2Q8N4X5 818 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 ESX1Q8N693 406 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 CT55Q8WUE5 264 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 CCT6BQ92526 530 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 SEC16BQ96JE7 1060 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 DRC3Q9H069 523 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 CHST8Q9H2A9 424 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 ACBD3Q9H3P7 528 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 MID1IP1Q9NPA3 183 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 DMRT3Q9NQL9 472 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 NDOR1Q9UHB4 597 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 RAXQ9Y2V3 346 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 TSC22D4Q9Y3Q8 395 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 PCDHGA11Q9Y5H2 935 aa20.7■□□□□ 0.9
SNX1-210ENST00000560260 ZFHX4Q86UP3 3567 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 A0A0A6YYC8 382 aaPredicted RBP20.69■□□□□ 0.9
SNX1-210ENST00000560260 I3L1I5 382 aaPredicted RBP20.69■□□□□ 0.9
SNX1-210ENST00000560260 TERTO14746 1132 aaKnown RBP20.69■□□□□ 0.9
SNX1-210ENST00000560260 NPHS1O60500 1241 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 ZNF888P0CJ79 500 aaPredicted RBP20.69■□□□□ 0.9
SNX1-210ENST00000560260 BGNP21810 368 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 ALAS2P22557 587 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 OR1D4P47884 311 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 ASPHQ12797 758 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 SLC9A5Q14940 896 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 ADPRMQ3LIE5 342 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 HHATQ5VTY9 493 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 VASH2Q86V25 355 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 PROSER1Q86XN7 944 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 ZNF248Q8NDW4 579 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms