RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CDC42P60953 191 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 CACNG1Q06432 222 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 B3GLCTQ6Y288 498 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 SLC39A13Q96H72 371 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 C1orf74Q96LT6 269 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 FAM129BQ96TA1 746 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 KATNBL1Q9H079 304 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 CARD8Q9Y2G2 431 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 MKI67P46013 3256 aaKnown RBP10.93□□□□□ -0.66
LDLR-208ENST00000558518 PARP14Q460N5 1801 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 WNT9AO14904 365 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 OR10H3O60404 316 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 GPX5O75715 221 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 MYL9P24844 172 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 YBEYP58557 167 aaPredicted RBP10.93□□□□□ -0.66
LDLR-208ENST00000558518 CDH18Q13634 790 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 COX20Q5RI15 118 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 PLET1Q6UQ28 207 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 DEF8Q6ZN54 512 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 ZZZ3Q8IYH5 903 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 C1orf52Q8N6N3 182 aaKnown RBP10.93□□□□□ -0.66
LDLR-208ENST00000558518 OR8H1Q8NGG4 311 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 EID2BQ96D98 161 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 PSKH2Q96QS6 385 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 CLSTN3Q9BQT9 956 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 PCDHGB3Q9Y5G1 929 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 H3BQ06 376 aaPredicted RBP10.93□□□□□ -0.66
LDLR-208ENST00000558518 TBL1XO60907 577 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 CRYZL1O95825 349 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 ANXA4P09525 319 aaPredicted RBP10.93□□□□□ -0.66
LDLR-208ENST00000558518 IL7P13232 177 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 NRIP1P48552 1158 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 ALDH9A1P49189 494 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 GATMP50440 423 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 CLDN8P56748 225 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 MEF2AQ02078 507 aaPredicted RBP10.93□□□□□ -0.66
LDLR-208ENST00000558518 CDC20Q12834 499 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 CDK10Q15131 360 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 QPRTQ15274 297 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 PCBP2Q15366 365 aaKnown RBP eCLIP10.93□□□□□ -0.663e-6■■■□□ 17.1
LDLR-208ENST00000558518 DUOXA1Q1HG43 343 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 RBFAQ8N0V3 343 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 TEX26Q8N6G2 289 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 C19orf18Q8NEA5 215 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 PIK3R3Q92569 461 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 DUSP26Q9BV47 211 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 UCK2Q9BZX2 261 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 NLKQ9UBE8 527 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 CRNNQ9UBG3 495 aaPredicted RBP10.93□□□□□ -0.66
LDLR-208ENST00000558518 MKLN1Q9UL63 735 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 TBC1D24Q9ULP9 559 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 PRELID1Q9Y255 219 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 CFL2Q9Y281 166 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 SPEF1Q9Y4P9 236 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 PPP2R3BQ9Y5P8 575 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 PDCD11Q14690 1871 aaKnown RBP10.93□□□□□ -0.66
LDLR-208ENST00000558518 CACNA1CQ13936 2221 aa10.93□□□□□ -0.66
LDLR-208ENST00000558518 MYL12BO14950 172 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 HLA-EP13747 358 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 EPORP19235 508 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 PTGER1P34995 402 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 MC1RQ01726 317 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 ACVR1Q04771 509 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 VEPH1Q14D04 833 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 C5orf22Q49AR2 442 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 CPTPQ5TA50 214 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 TRIQKQ629K1 86 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 PRSS55Q6UWB4 352 aaPredicted RBP10.92□□□□□ -0.66
LDLR-208ENST00000558518 ASB18Q6ZVZ8 466 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 C11orf96Q7Z7L8 435 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 UBQLNLQ8IYU4 475 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 ACAT2Q9BWD1 397 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 MAGIXQ9H6Y5 334 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 ADARB2Q9NS39 739 aaKnown RBP10.92□□□□□ -0.66
LDLR-208ENST00000558518 CLN6Q9NWW5 311 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 TVP23BQ9NYZ1 205 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 NAALAD2Q9Y3Q0 740 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 GON4LQ3T8J9 2241 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 GLYATL1P3A0A0U1RQE8 302 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 ADAMDEC1O15204 470 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 ACSL4O60488 711 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 PSMA1P25786 263 aaKnown RBP10.92□□□□□ -0.66
LDLR-208ENST00000558518 RAB8AP61006 207 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 SCN1BQ07699 218 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 Q5BKY6 102 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 TNFAIP8L2Q6P589 184 aaPredicted RBP10.92□□□□□ -0.66
LDLR-208ENST00000558518 AMIGO1Q86WK6 493 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 SYT14Q8NB59 555 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 TMCO6Q96DC7 493 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 BEX1Q9HBH7 125 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 SCML2Q9UQR0 700 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 USP34Q70CQ2 3546 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 A0A1W2PQL4 384 aaPredicted RBP10.92□□□□□ -0.66
LDLR-208ENST00000558518 YY2O15391 372 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 CCNB2O95067 398 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 EPOP01588 193 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 GSTM1P09488 218 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 ATXN8OSP0DMR3 200 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 ATP5C1P36542 298 aaKnown RBP10.92□□□□□ -0.66
LDLR-208ENST00000558518 SRP54P61011 504 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms