RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 ZNF227Q86WZ6 799 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 IRF2BP1Q8IU81 584 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 C9orf43Q8TAL5 461 aaPredicted RBP13.55□□□□□ -0.24
SPG11-210ENST00000558319 HCAR2Q8TDS4 363 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 SSX3Q99909 188 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 SLC2A6Q9UGQ3 507 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 CXorf49A8MYA2 514 aaPredicted RBP13.55□□□□□ -0.24
SPG11-210ENST00000558319 CLIC1O00299 241 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 EEF1E1O43324 174 aaKnown RBP13.55□□□□□ -0.24
SPG11-210ENST00000558319 CLDN7O95471 211 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 MRPL3P09001 348 aaKnown RBP13.55□□□□□ -0.24
SPG11-210ENST00000558319 TACSTD2P09758 323 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 PRPS2P11908 318 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 ANXA8P13928 327 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 GAD2Q05329 585 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 TDRPQ86YL5 185 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 SSU72Q9NP77 194 aaKnown RBP13.55□□□□□ -0.24
SPG11-210ENST00000558319 A0A1W2PPL8 197 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 A0A1W2PRB8 838 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 OTOL1A6NHN0 477 aaPredicted RBP13.55□□□□□ -0.24
SPG11-210ENST00000558319 ERI3O43414 337 aaKnown RBP13.55□□□□□ -0.24
SPG11-210ENST00000558319 OR2B3O76000 313 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 KCNC4Q03721 635 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 ARHGAP40Q5TG30 622 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 LHX5Q9H2C1 402 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 APOBEC3GQ9HC16 384 aaKnown RBP13.55□□□□□ -0.24
SPG11-210ENST00000558319 POFUT2Q9Y2G5 429 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.55□□□□□ -0.24
SPG11-210ENST00000558319 INMT-MINDY4F8WBC2 141 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 PCDH7O60245 1069 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 MAGEA6P43360 314 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 LUMP51884 338 aaPredicted RBP13.55□□□□□ -0.24
SPG11-210ENST00000558319 UFM1P61960 85 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 LRRC57Q8N9N7 239 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 SLC5A7Q9GZV3 580 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 MS4A12Q9NXJ0 267 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 ERVK-18Q9QC07 812 aa13.55□□□□□ -0.24
SPG11-210ENST00000558319 C11orf98E9PRG8 122 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 KCNQ1P51787 676 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 PNLDC1Q8NA58 520 aaKnown RBP13.54□□□□□ -0.24
SPG11-210ENST00000558319 CNIH3Q8TBE1 160 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 MAELQ96JY0 434 aaKnown RBP13.54□□□□□ -0.24
SPG11-210ENST00000558319 IL21RQ9HBE5 538 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 CA14Q9ULX7 337 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 LRRC42Q9Y546 428 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 TNFSF12O43508 249 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 ABCB7O75027 752 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 RHOQP17081 205 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 OR2T5Q6IEZ7 315 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 TMEM156Q8N614 296 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 LRRC52Q8N7C0 313 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 ZNF565Q8N9K5 539 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 OR2T29Q8NH02 315 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 TMEM80Q96HE8 168 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 SNX27Q96L92 541 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 RNF39Q9H2S5 420 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 POT1Q9NUX5 634 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 CALML5Q9NZT1 146 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 DRAXINQ8NBI3 349 aaPredicted RBP13.54□□□□□ -0.24
SPG11-210ENST00000558319 OR9I1Q8NGQ6 314 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 HSD17B14Q9BPX1 270 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 SGIP1Q9BQI5 828 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 NDC1Q9BTX1 674 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 WDR26Q9H7D7 661 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 USP29Q9HBJ7 922 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 MKKSQ9NPJ1 570 aaPredicted RBP13.54□□□□□ -0.24
SPG11-210ENST00000558319 FBXL12Q9NXK8 326 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 SLC22A14Q9Y267 594 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 PCDHB11Q9Y5F2 797 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 AQP12BA6NM10 295 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 ECI2O75521 394 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 RAB5BP61020 215 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 CHRNA6Q15825 494 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 SLC35F1Q5T1Q4 408 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 AQP12AQ8IXF9 295 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 S100A16Q96FQ6 103 aaKnown RBP13.54□□□□□ -0.24
SPG11-210ENST00000558319 TMEM109Q9BVC6 243 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 EXTL2Q9UBQ6 330 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 STXBP5LQ9Y2K9 1186 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 OR6C74A6NCV1 312 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 F5H0A9 414 aaPredicted RBP13.54□□□□□ -0.24
SPG11-210ENST00000558319 HCKP08631 526 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 PER3P56645 1201 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 RBM39Q14498 530 aaKnown RBP13.54□□□□□ -0.24
SPG11-210ENST00000558319 TATDN1Q6P1N9 297 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 LYSMD3Q7Z3D4 306 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 ERVK-19Q9WJR5 959 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 BCL9O00512 1426 aa13.54□□□□□ -0.24
SPG11-210ENST00000558319 A0A1B0GVM2 712 aa13.53□□□□□ -0.24
SPG11-210ENST00000558319 TNFP01375 233 aa13.53□□□□□ -0.24
SPG11-210ENST00000558319 ADH5P11766 374 aa13.53□□□□□ -0.24
SPG11-210ENST00000558319 LCLAT1Q6UWP7 414 aa13.53□□□□□ -0.24
SPG11-210ENST00000558319 SLAIN1Q8ND83 568 aa13.53□□□□□ -0.24
SPG11-210ENST00000558319 SYT17Q9BSW7 474 aa13.53□□□□□ -0.24
SPG11-210ENST00000558319 MGAT4CQ9UBM8 478 aa13.53□□□□□ -0.24
SPG11-210ENST00000558319 CYP8B1Q9UNU6 501 aa13.53□□□□□ -0.24
SPG11-210ENST00000558319 PCDHGA6Q9Y5G7 932 aa13.53□□□□□ -0.24
SPG11-210ENST00000558319 CSTBP04080 98 aaKnown RBP13.53□□□□□ -0.24
SPG11-210ENST00000558319 MATN1P21941 496 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms