RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SLC8B1Q6J4K2 584 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 TPRG1Q6ZUI0 275 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 GALNT10Q86SR1 603 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 SLC44A2Q8IWA5 706 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-231ENST00000557433 CLECL1Q8IZS7 167 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 SLC7A5P1Q8MH63 180 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 CAPSLQ8WWF8 208 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 ERLEC1Q96DZ1 483 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 TRNT1Q96Q11 434 aaKnown RBP15.68■□□□□ 0.1
SHMT2-231ENST00000557433 TRMT13Q9NUP7 481 aaKnown RBP15.68■□□□□ 0.1
SHMT2-231ENST00000557433 GPR83Q9NYM4 423 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 SLC22A14Q9Y267 594 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 RBMX2Q9Y388 322 aaKnown RBP15.68■□□□□ 0.1
SHMT2-231ENST00000557433 TBKBP1A7MCY6 615 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 H0YIV9 168 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 SLITRK5O94991 958 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 PTHP01270 115 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 GRK5P34947 590 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 BMPR1AP36894 532 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 IDH2P48735 452 aaKnown RBP15.68■□□□□ 0.1
SHMT2-231ENST00000557433 SLC11A1P49279 550 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 PNLIPRP1P54315 467 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 FCHO2Q0JRZ9 810 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 ZXDCQ2QGD7 858 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-231ENST00000557433 FAM92BQ6ZTR7 304 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 TRIM69Q86WT6 500 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 RNF130Q86XS8 419 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 RASGRP3Q8IV61 690 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 KLHDC8AQ8IYD2 350 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 LGI4Q8N135 537 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 GOT1L1Q8NHS2 421 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-231ENST00000557433 TRMT2BQ96GJ1 504 aaKnown RBP15.68■□□□□ 0.1
SHMT2-231ENST00000557433 CHCHD6Q9BRQ6 235 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 CENPOQ9BU64 300 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 TM6SF2Q9BZW4 377 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 NMRK2Q9NPI5 230 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 AFF4Q9UHB7 1163 aaKnown RBP15.68■□□□□ 0.1
SHMT2-231ENST00000557433 PPIL1Q9Y3C6 166 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 PCDHGB2Q9Y5G2 931 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 TMEM229AB2RXF0 380 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 GFRA2O00451 464 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 IDH3BO43837 385 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 KIAA0513O60268 411 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 IRF1P10914 325 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 HMGA1P17096 107 aaKnown RBP15.67■□□□□ 0.1
SHMT2-231ENST00000557433 HMGA2P52926 109 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 OR2B6P58173 313 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 COPZ1P61923 177 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 SPIN4Q56A73 249 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.67■□□□□ 0.1
SHMT2-231ENST00000557433 GRHL2Q6ISB3 625 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 TRAF7Q6Q0C0 670 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 TSEN54Q7Z6J9 526 aaKnown RBP15.67■□□□□ 0.1
SHMT2-231ENST00000557433 SLC30A8Q8IWU4 369 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 UBQLNLQ8IYU4 475 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 GPR26Q8NDV2 337 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 SH3KBP1Q96B97 665 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 BHLHE41Q9C0J9 482 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-231ENST00000557433 TP63Q9H3D4 680 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-231ENST00000557433 RAD18Q9NS91 495 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 CLN6Q9NWW5 311 aa15.67■□□□□ 0.1
SHMT2-231ENST00000557433 CAPN5O15484 640 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-231ENST00000557433 PRAMEF4O60810 478 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 KRT75O95678 551 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 RPL3P39023 403 aaKnown RBP15.66■□□□□ 0.1
SHMT2-231ENST00000557433 PRIM2P49643 509 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 PFN3P60673 137 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 SPIBQ01892 262 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 PRAMEF9Q5VWM5 478 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 USP45Q70EL2 814 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 GEMIN6Q8WXD5 167 aaKnown RBP15.66■□□□□ 0.1
SHMT2-231ENST00000557433 CLP1Q92989 425 aaKnown RBP15.66■□□□□ 0.1
SHMT2-231ENST00000557433 ASIC4Q96FT7 647 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 SCRN2Q96FV2 425 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 MGLLQ99685 303 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 CCM2Q9BSQ5 444 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 EMILIN2Q9BXX0 1053 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 TMEM38AQ9H6F2 299 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 FBXL12Q9NXK8 326 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 BTBD3Q9Y2F9 522 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 HCN4Q9Y3Q4 1203 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 BACE2Q9Y5Z0 518 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 GABRR3A8MPY1 467 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 HTR3AP46098 478 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 B4GALNT1Q00973 533 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 RHAGQ02094 409 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 HSPA14Q0VDF9 509 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 GCNT6Q5T4J0 391 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 CRTC1Q6UUV9 634 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 TMC5Q6UXY8 1006 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-231ENST00000557433 SLC22A15Q8IZD6 547 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 CYP4Z2PQ8N1L4 340 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 OR52N2Q8NGI0 321 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 OR6F1Q8NGZ6 308 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 SKA2Q8WVK7 121 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-231ENST00000557433 C17orf50Q8WW18 174 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 Q96MT0 163 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 CASD1Q96PB1 797 aa15.66■□□□□ 0.1
SHMT2-231ENST00000557433 TAPBPLQ9BX59 468 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms