RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 RHDQ02161 417 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 PCDH1Q08174 1060 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 HERC3Q15034 1050 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 UGT8Q16880 541 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 ATP1A1-AS1Q5TC04 95 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 FAM69BQ5VUD6 431 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 SH2D5Q6ZV89 423 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 GOLGA7Q7Z5G4 137 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 C4orf33Q8N1A6 199 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 OR2Y1Q8NGV0 311 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 NT5CQ8TCD5 201 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 CCT6BQ92526 530 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 UBE2E3Q969T4 207 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 MOCOSQ96EN8 888 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 MMABQ96EY8 250 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-228ENST00000557302 CATSPER2Q96P56 530 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 TMEM109Q9BVC6 243 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 SLC26A1Q9H2B4 701 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 IPPKQ9H8X2 491 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 WDR54Q9H977 334 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 ACTR8Q9H981 624 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 ANKHQ9HCJ1 492 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 PRM3Q9NNZ6 103 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 CTSFQ9UBX1 484 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 NXT1Q9UKK6 140 aaKnown RBP12.91□□□□□ -0.34
SHMT2-228ENST00000557302 SLC22A7Q9Y694 548 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 FER1L5A0AVI2 2057 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 CACNA1GO43497 2377 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 ANKDD1BA6NHY2 528 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 KALRNO60229 2985 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 CNOT3O75175 753 aaKnown RBP12.9□□□□□ -0.34
SHMT2-228ENST00000557302 NSA2O95478 260 aaKnown RBP12.9□□□□□ -0.34
SHMT2-228ENST00000557302 ITGB2P05107 769 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 SERPINA6P08185 405 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 IL1RNP18510 177 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 CRHR1P34998 444 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 SKP1P63208 163 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 OCA2Q04671 838 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 SLC18A2Q05940 514 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 IL10RAQ13651 578 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 E2F2Q14209 437 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 NKG7Q16617 165 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 KRT71Q3SY84 523 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 MED27Q6P2C8 311 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 ABHD13Q7L211 337 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 MYLK4Q86YV6 388 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-228ENST00000557302 OR9A4Q8NGU2 314 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 CREB3L4Q8TEY5 395 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 ATP6V1E2Q96A05 226 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 YIPF2Q9BWQ6 316 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 SLC6A16Q9GZN6 736 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 RRAGDQ9NQL2 400 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-228ENST00000557302 TRPC4Q9UBN4 977 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 ZNF282Q9UDV7 671 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-228ENST00000557302 PCTPQ9UKL6 214 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 GRID1Q9ULK0 1009 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 MAP4K5Q9Y4K4 846 aa12.9□□□□□ -0.34
SHMT2-228ENST00000557302 CCDC151A5D8V7 595 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 H0YIG0 161 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 DLX3O60479 287 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 UGDHO60701 494 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 CLEC3AO75596 197 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 RPS17P08708 135 aaKnown RBP12.89□□□□□ -0.35
SHMT2-228ENST00000557302 ZNF888P0CJ79 500 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-228ENST00000557302 ALOX12P18054 663 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 ATP5F1P24539 256 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-228ENST00000557302 HPDP32754 393 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-228ENST00000557302 ARL1P40616 181 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-228ENST00000557302 HNF4AP41235 474 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 STXBP1P61764 594 aaKnown RBP12.89□□□□□ -0.35
SHMT2-228ENST00000557302 HERVK_113P63132 956 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 SNRPNP63162 240 aaKnown RBP12.89□□□□□ -0.35
SHMT2-228ENST00000557302 ZNF844Q08AG5 666 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 DEFB109BQ30KR1 87 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 CCDC153Q494R4 210 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 TOR1AIP1Q5JTV8 583 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 LIPJQ5W064 366 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 GRHL2Q6ISB3 625 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 NIPAL1Q6NVV3 410 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 PRSS41Q7RTY9 318 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 TRABD2AQ86V40 505 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 RAB43Q86YS6 212 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 SLC22A9Q8IVM8 553 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 SRRM1Q8IYB3 904 aaKnown RBP12.89□□□□□ -0.35
SHMT2-228ENST00000557302 AFAP1L2Q8N4X5 818 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 AMER3Q8N944 861 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 STT3BQ8TCJ2 826 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 PPP4R1Q8TF05 950 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 MIEF2Q96C03 454 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 SPSB2Q99619 263 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 C1QTNF3Q9BXJ4 246 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 ERVK-6Q9BXR3 956 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 IQCGQ9H095 443 aaKnown RBP12.89□□□□□ -0.35
SHMT2-228ENST00000557302 RHBGQ9H310 441 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 NOL11Q9H8H0 719 aaKnown RBP12.89□□□□□ -0.35
SHMT2-228ENST00000557302 MKKSQ9NPJ1 570 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-228ENST00000557302 EMCNQ9ULC0 261 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 ZNF490Q9ULM2 529 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-228ENST00000557302 POLHQ9Y253 713 aa12.89□□□□□ -0.35
SHMT2-228ENST00000557302 NAALAD2Q9Y3Q0 740 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms