RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 FAM26DQ5JW98 314 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 DLEU7Q6UYE1 221 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 HOMEZQ8IX15 550 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 SPARTQ8N0X7 666 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 SVOPLQ8N434 492 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 CHPT1Q8WUD6 406 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 TFGQ92734 400 aaPredicted RBP14.32□□□□□ -0.12
CUX1-215ENST00000556210 NEIL2Q969S2 332 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 RNF31Q96EP0 1072 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 CMTM7Q96FZ5 175 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 ZNF641Q96N77 438 aaPredicted RBP14.32□□□□□ -0.12
CUX1-215ENST00000556210 COL21A1Q96P44 957 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 TTLL2Q9BWV7 592 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 TBC1D14Q9P2M4 693 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 ERVW-1Q9UQF0 538 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 A8MU76 341 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 STK25O00506 426 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 LCKP06239 509 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 CDC42P60953 191 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 COPZ1P61923 177 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 ACVR1Q04771 509 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 SLC14A2Q15849 920 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 BRAT1Q6PJG6 821 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 GATAD2AQ86YP4 633 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 NPAS3Q8IXF0 933 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 CAMKK1Q8N5S9 505 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 TSPEARQ8WU66 669 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 SH3YL1Q96HL8 342 aaPredicted RBP14.32□□□□□ -0.12
CUX1-215ENST00000556210 C12orf66Q96MD2 445 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 FEVQ99581 238 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 CCM2Q9BSQ5 444 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 THG1LQ9NWX6 298 aaKnown RBP14.32□□□□□ -0.12
CUX1-215ENST00000556210 H2AFY2Q9P0M6 372 aaPredicted RBP14.32□□□□□ -0.12
CUX1-215ENST00000556210 TRPS1Q9UHF7 1281 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 CAB39Q9Y376 341 aaPredicted RBP14.32□□□□□ -0.12
CUX1-215ENST00000556210 SEC16AO15027 2179 aa14.32□□□□□ -0.12
CUX1-215ENST00000556210 GADD45GO95257 159 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 F11P03951 625 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 HNMTP50135 292 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 AP1S2P56377 157 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 RPP38P78345 283 aaKnown RBP14.31□□□□□ -0.12
CUX1-215ENST00000556210 MTSS1LQ765P7 747 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 CACTIN-AS1Q8N1I8 211 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 ZFP90Q8TF47 636 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 TIFAQ96CG3 184 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 F2RL3Q96RI0 385 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 KAT8Q9H7Z6 458 aaKnown RBP14.31□□□□□ -0.12
CUX1-215ENST00000556210 BTBD3Q9Y2F9 522 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 EFCAB9A8MZ26 197 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 SLC9A3R1O14745 358 aaPredicted RBP14.31□□□□□ -0.12
CUX1-215ENST00000556210 DNAJA1P31689 397 aaKnown RBP14.31□□□□□ -0.12
CUX1-215ENST00000556210 ASMTP46597 345 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 TJAP1Q5JTD0 557 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 CLEC12AQ5QGZ9 265 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 CEACAM20Q6UY09 585 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 ZNF551Q7Z340 670 aaPredicted RBP14.31□□□□□ -0.12
CUX1-215ENST00000556210 CYP4Z1Q86W10 505 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 NLGN4XQ8N0W4 816 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 OR7G3Q8NG95 312 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 DPF3Q92784 378 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 SEMA3GQ9NS98 782 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 ANGPT4Q9Y264 503 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 COQ9O75208 318 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 NME6O75414 186 aaPredicted RBP14.31□□□□□ -0.12
CUX1-215ENST00000556210 GSTM2P28161 218 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 MAPK9P45984 424 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 ERVFC1P60507 584 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 KRR1Q13601 381 aaKnown RBP14.31□□□□□ -0.12
CUX1-215ENST00000556210 TCEAL5Q5H9L2 206 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 AMZ2Q86W34 360 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 GOLM1Q8NBJ4 401 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 CLIP3Q96DZ5 547 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 DEPDC7Q96QD5 511 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 ABCB9Q9NP78 766 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 SLC1A7O00341 560 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 OXSR1O95747 527 aaPredicted RBP14.31□□□□□ -0.12
CUX1-215ENST00000556210 ADH1CP00326 375 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 ACPPP15309 386 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 OLIG3Q7RTU3 272 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 SPRED1Q7Z699 444 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 TCEAL8Q8IYN2 117 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 OR13F1Q8NGS4 319 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 ZCCHC10Q8TBK6 192 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 FAR1Q8WVX9 515 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 OVCA2Q8WZ82 227 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 RPL3LQ92901 407 aaKnown RBP14.31□□□□□ -0.12
CUX1-215ENST00000556210 NUS1Q96E22 293 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 SLC29A3Q9BZD2 475 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 TVP23BQ9NYZ1 205 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 SLC25A37Q9NYZ2 338 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 TMED5Q9Y3A6 229 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 OR1A2Q9Y585 309 aa14.31□□□□□ -0.12
CUX1-215ENST00000556210 TRBC2A0A5B9 178 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 CH25HO95992 272 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 CCDC159P0C7I6 412 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 ZDHHC11BP0C7U3 371 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 CDK6Q00534 326 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 TAB1Q15750 504 aa14.3□□□□□ -0.12
CUX1-215ENST00000556210 CCSAPQ6IQ19 270 aaPredicted RBP14.3□□□□□ -0.12
CUX1-215ENST00000556210 TMIGD1Q6UXZ0 262 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms