RNA–Protein interactions for RNA: ENST00000555905.5

TMEM260-208, Transcript of transmembrane protein 260, humanhuman

TSL 5

Gene TMEM260, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-208ENST00000555905 TXNDC9O14530 226 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 LSM1O15116 133 aaKnown RBP10.54□□□□□ -0.72
TMEM260-208ENST00000555905 KLHL41O60662 606 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 PRAMEF10O60809 474 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 SEC22BO75396 215 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 RFPL3O75679 317 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 TGFB1P01137 390 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 SERPINA6P08185 405 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 ANKRD34CP0C6C1 535 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 THRAP10827 490 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 PRPH2P23942 346 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 SEPHS1P49903 392 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 RAP1GDS1P52306 607 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 ARF3P61204 181 aaPredicted RBP10.54□□□□□ -0.72
TMEM260-208ENST00000555905 STXBP1P61764 594 aaKnown RBP10.54□□□□□ -0.72
TMEM260-208ENST00000555905 TGM3Q08188 693 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 MAD2L1Q13257 205 aaPredicted RBP10.54□□□□□ -0.72
TMEM260-208ENST00000555905 PWP1Q13610 501 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 CUL3Q13618 768 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 TERF2Q15554 542 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 SMU1Q2TAY7 513 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 AP5B1Q2VPB7 878 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 LSM12Q3MHD2 195 aaKnown RBP10.54□□□□□ -0.72
TMEM260-208ENST00000555905 TMEM35AQ53FP2 167 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 CCDC157Q569K6 752 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 PHF19Q5T6S3 580 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 KHDRBS2Q5VWX1 349 aaKnown RBP10.54□□□□□ -0.72
TMEM260-208ENST00000555905 METTL21CQ5VZV1 264 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 ZNF574Q6ZN55 896 aaPredicted RBP10.54□□□□□ -0.72
TMEM260-208ENST00000555905 LARP4Q71RC2 724 aaKnown RBP eCLIP10.54□□□□□ -0.72
TMEM260-208ENST00000555905 VN1R5Q7Z5H4 357 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 SPATA19Q7Z5L4 167 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 ZFAND4Q86XD8 727 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 DNAJC22Q8N4W6 341 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 FNDC5Q8NAU1 212 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 CAMKVQ8NCB2 501 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 CREB3L4Q8TEY5 395 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 KLHL6Q8WZ60 621 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 METTL2AQ96IZ6 378 aaKnown RBP10.54□□□□□ -0.72
TMEM260-208ENST00000555905 CCDC74BQ96LY2 380 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 OR2A5Q96R48 311 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 MS4A8Q9BY19 250 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 OR51B5Q9H339 312 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 ZNF768Q9H5H4 540 aaKnown RBP10.54□□□□□ -0.72
TMEM260-208ENST00000555905 FAM60AQ9NP50 221 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 C1orf109Q9NX04 203 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 AHSPQ9NZD4 102 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 PDP2Q9P2J9 529 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 HEY2Q9UBP5 337 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 PLCL2Q9UPR0 1127 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 CCL27Q9Y4X3 112 aa10.54□□□□□ -0.72
TMEM260-208ENST00000555905 LOC105369274A0A096LPK9 316 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 LOC102723532A0A0G2JNH3 316 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 LRIT2A6NDA9 550 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 URADA6NGE7 173 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 NPIPB8E9PQR5 432 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 UBDO15205 165 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 CASC3O15234 703 aaKnown RBP10.53□□□□□ -0.72
TMEM260-208ENST00000555905 SRPX2O60687 465 aaPredicted RBP10.53□□□□□ -0.72
TMEM260-208ENST00000555905 CCDC22O60826 627 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 SH3BGRLO75368 114 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 DCTN3O75935 186 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 MYO1DO94832 1006 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 SEMA3DO95025 777 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 EIF2S1P05198 315 aaKnown RBP10.53□□□□□ -0.72
TMEM260-208ENST00000555905 PRR35P0CG20 571 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 CDK4P11802 303 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 NELFEP18615 380 aaKnown RBP10.53□□□□□ -0.72
TMEM260-208ENST00000555905 NCF2P19878 526 aaPredicted RBP10.53□□□□□ -0.72
TMEM260-208ENST00000555905 MAPK1P28482 360 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 VSX2P58304 361 aaPredicted RBP10.53□□□□□ -0.72
TMEM260-208ENST00000555905 ERVK-8P63133 956 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 RPL38P63173 70 aaKnown RBP10.53□□□□□ -0.72
TMEM260-208ENST00000555905 EMX2Q04743 252 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 ACSM2AQ08AH3 577 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 TRA2AQ13595 282 aaKnown RBP eCLIP10.53□□□□□ -0.72
TMEM260-208ENST00000555905 TRIP6Q15654 476 aaKnown RBP10.53□□□□□ -0.72
TMEM260-208ENST00000555905 SPIN4Q56A73 249 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 TOR1AIP1Q5JTV8 583 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 C6orf136Q5SQH8 315 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 MANEAQ5SRI9 462 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 DEPDC1Q5TB30 811 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 ACSM2BQ68CK6 577 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 FRMPD2BQ6IN97 320 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 OGFOD2Q6N063 350 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 RBM44Q6ZP01 1051 aaKnown RBP10.53□□□□□ -0.72
TMEM260-208ENST00000555905 TMPRSS9Q7Z410 1059 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 VN1R4Q7Z5H5 301 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 ALYREFQ86V81 257 aaKnown RBP10.53□□□□□ -0.72
TMEM260-208ENST00000555905 PARP9Q8IXQ6 854 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 OR4N4Q8N0Y3 316 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 D2HGDHQ8N465 521 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 CSNK1A1LQ8N752 337 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 SRFBP1Q8NEF9 429 aaKnown RBP10.53□□□□□ -0.72
TMEM260-208ENST00000555905 NT5CQ8TCD5 201 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 NETO1Q8TDF5 533 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 RGMAQ96B86 450 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 TM4SF19Q96DZ7 209 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 SLC41A2Q96JW4 573 aa10.53□□□□□ -0.72
TMEM260-208ENST00000555905 TMEM74Q96NL1 305 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms