RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 CDH18Q13634 790 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 PDIA5Q14554 519 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 LRRC23Q53EV4 343 aaPredicted RBP5.32□□□□□ -1.56
SCFD1-208ENST00000553278 ZNF542PQ5EBM4 170 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 SLC35D3Q5M8T2 416 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 ATAD3BQ5T9A4 648 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 MORN5Q5VZ52 161 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 PCSK4Q6UW60 755 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 TMEM26Q6ZUK4 368 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 TECPR1Q7Z6L1 1165 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 MUC20Q8N307 709 aaPredicted RBP5.32□□□□□ -1.56
SCFD1-208ENST00000553278 OR52B4Q8NGK2 314 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 SAP25Q8TEE9 199 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 UBTD2Q8WUN7 234 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 PHLDA1Q8WV24 401 aaPredicted RBP5.32□□□□□ -1.56
SCFD1-208ENST00000553278 RBM41Q96IZ5 413 aaKnown RBP5.32□□□□□ -1.56
SCFD1-208ENST00000553278 CCDC3Q9BQI4 270 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 FICDQ9BVA6 458 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 MARCH7Q9H992 704 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 ROPN1Q9HAT0 212 aaPredicted RBP5.32□□□□□ -1.56
SCFD1-208ENST00000553278 VAT1LQ9HCJ6 419 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 A4GALTQ9NPC4 353 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 FGF21Q9NSA1 209 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 FAM207AQ9NSI2 230 aaPredicted RBP5.32□□□□□ -1.56
SCFD1-208ENST00000553278 PTTG2Q9NZH5 202 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 NARFQ9UHQ1 456 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 PSORS1C1Q9UIG5 152 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 ENTPD4Q9Y227 616 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 NCKAP1Q9Y2A7 1128 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 MRPS2Q9Y399 296 aaKnown RBP5.32□□□□□ -1.56
SCFD1-208ENST00000553278 DISP3Q9P2K9 1392 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 IGLV5-37A0A075B6J1 123 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 PMS2P2O95744 297 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 CELA2AP08217 269 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 SERPINF2P08697 491 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 GSTA2P09210 222 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 CETPP11597 493 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 DGKAP23743 735 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 HLA-FP30511 346 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 SRD5A2P31213 254 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 CLDN17P56750 224 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 COL10A1Q03692 680 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 SGCGQ13326 291 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 FHL2Q14192 279 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 MAJINQ3KP22 176 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 GGNQ86UU5 652 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 CLIP4Q8N3C7 705 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 ZNF114Q8NC26 417 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 RNF149Q8NC42 400 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 OR52N5Q8NH56 324 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 METTL21AQ8WXB1 218 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 SEPT8Q92599 483 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 CCDC51Q96ER9 411 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 ZNF385AQ96PM9 386 aaKnown RBP5.31□□□□□ -1.56
SCFD1-208ENST00000553278 GPA33Q99795 319 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 PIGQQ9BRB3 760 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 NACA2Q9H009 215 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 C5orf66Q9H5L9 145 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 FKRPQ9H9S5 495 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 IL20RAQ9UHF4 553 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 POU2F3Q9UKI9 436 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 MYRFQ9Y2G1 1151 aa5.31□□□□□ -1.56
SCFD1-208ENST00000553278 DDX49Q9Y6V7 483 aaKnown RBP5.31□□□□□ -1.56
SCFD1-208ENST00000553278 A0A1W2PN81 502 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 FAM230AA0A1W2PPH8 454 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 CCDC162PA2VCL2 907 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 CHEK1O14757 476 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 IKBKBO14920 756 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 GRID2O43424 1007 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 RBMXL2O75526 392 aaKnown RBP5.3□□□□□ -1.56
SCFD1-208ENST00000553278 PRKRAO75569 313 aaKnown RBP5.3□□□□□ -1.56
SCFD1-208ENST00000553278 PIGNO95427 931 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 PROS1P07225 676 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 YES1P07947 543 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 TNNI3P19429 210 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 HNRNPA2B1P22626 353 aaKnown RBP5.3□□□□□ -1.56
SCFD1-208ENST00000553278 PBLDP30039 288 aaPredicted RBP5.3□□□□□ -1.56
SCFD1-208ENST00000553278 ALDH1B1P30837 517 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 DUTP33316 252 aaKnown RBP5.3□□□□□ -1.56
SCFD1-208ENST00000553278 CHRNA7P36544 502 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 MAGEA11P43364 429 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 TNFRSF4P43489 277 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 CLCN4P51793 760 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 MAZP56270 477 aaKnown RBP5.3□□□□□ -1.56
SCFD1-208ENST00000553278 HSF2Q03933 536 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 SNX1Q13596 522 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 ZKSCAN8Q15776 578 aaPredicted RBP5.3□□□□□ -1.56
SCFD1-208ENST00000553278 EZH2Q15910 746 aaKnown RBP5.3□□□□□ -1.56
SCFD1-208ENST00000553278 SRSF7Q16629 238 aaKnown RBP eCLIP5.3□□□□□ -1.56
SCFD1-208ENST00000553278 IRAK1BP1Q5VVH5 260 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 IL23RQ5VWK5 629 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 NKAIN2Q5VXU1 208 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 CDHR3Q6ZTQ4 885 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 SFR1Q86XK3 245 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 MISPQ8IVT2 679 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 RCOR2Q8IZ40 523 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 EID3Q8N140 333 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 KLHDC1Q8N7A1 406 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 LMNTD1Q8N9Z9 388 aa5.3□□□□□ -1.56
SCFD1-208ENST00000553278 SMRP1Q8NCR6 262 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms