RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 NRIP1P48552 1158 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 EMX1Q04741 257 aaPredicted RBP16.25■□□□□ 0.19
USP28-208ENST00000540438 DBPQ10586 325 aaPredicted RBP16.25■□□□□ 0.19
USP28-208ENST00000540438 GBX1Q14549 363 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 MPEG1Q2M385 716 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 UTS2BQ765I0 119 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 B3GNT8Q7Z7M8 397 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 PIK3C3Q8NEB9 887 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 DDHD1Q8NEL9 900 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 PROX1Q92786 737 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 F2RL3Q96RI0 385 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 TAC3Q9UHF0 121 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 SNX5Q9Y5X3 404 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 H7BY64 318 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 SCAMP2O15127 329 aaKnown RBP16.25■□□□□ 0.19
USP28-208ENST00000540438 PSIP1O75475 530 aaKnown RBP16.25■□□□□ 0.19
USP28-208ENST00000540438 HOXB3P14651 431 aaPredicted RBP16.25■□□□□ 0.19
USP28-208ENST00000540438 CCNA2P20248 432 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 BMXP51813 675 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 SEC13P55735 322 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 AP1S2P56377 157 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 SLCO4C1Q6ZQN7 724 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 DGLUCYQ7Z3D6 616 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 SLC15A4Q8N697 577 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 AMER3Q8N944 861 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 GOLM1Q8NBJ4 401 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 PRAP1Q96NZ9 151 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 OSBPL6Q9BZF3 934 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 ANKRA2Q9H9E1 313 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 SLC5A10A0PJK1 596 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 GCM2O75603 506 aaPredicted RBP16.24■□□□□ 0.19
USP28-208ENST00000540438 IL3P08700 152 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 BMPR1AP36894 532 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 PRIM2P49643 509 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 CCR3P51677 355 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 NPTX1Q15818 432 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 PERM1Q5SV97 790 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 OR13F1Q8NGS4 319 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 CSGALNACT1Q8TDX6 532 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 SLC35A5Q9BS91 424 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 YIPF4Q9BSR8 244 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 CFHR5Q9BXR6 569 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 FZD3Q9NPG1 666 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 IGLON5A6NGN9 336 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 CCNDBP1O95273 360 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 PAK4O96013 591 aaPredicted RBP16.24■□□□□ 0.19
USP28-208ENST00000540438 MAGP20916 626 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 CALRP27797 417 aaKnown RBP16.24■□□□□ 0.19
USP28-208ENST00000540438 MAPK1P28482 360 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 CHI3L1P36222 383 aaPredicted RBP16.24■□□□□ 0.19
USP28-208ENST00000540438 GP2P55259 537 aaKnown RBP16.24■□□□□ 0.19
USP28-208ENST00000540438 NCS1P62166 190 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 TAP2Q03519 686 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 HSPB3Q12988 150 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 ITGADQ13349 1161 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 RGNQ15493 299 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 SLC5A12Q1EHB4 618 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 TMEM31Q5JXX7 168 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 C16orf87Q6PH81 154 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 NDNFQ8TB73 568 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 TBC1D15Q8TC07 691 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 TESCQ96BS2 214 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 NUS1Q96E22 293 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 WDR70Q9NW82 654 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 RUVBL1Q9Y265 456 aaKnown RBP16.24■□□□□ 0.19
USP28-208ENST00000540438 H0YAE9 185 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 ABCB7O75027 752 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 MT-ND2P03891 347 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 RETP07949 1114 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 MPC1LP0DKB6 136 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 SPTBP11277 2137 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 HOXA9P31269 272 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 ZNF234Q14588 700 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 FAM78AQ5JUQ0 283 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 MED27Q6P2C8 311 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 NPAS3Q8IXF0 933 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 PLPP6Q8IY26 295 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 GLMNQ92990 594 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 FEVQ99581 238 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 RNF167Q9H6Y7 350 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 REEP1Q9H902 201 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 IL1RAPQ9NPH3 570 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 SERGEFQ9UGK8 458 aa16.24■□□□□ 0.19
USP28-208ENST00000540438 PIPSLA2A3N6 862 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 PRAMEF25A6NGN4 478 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 FAM20BO75063 409 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 BCL10O95999 233 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 IGFBP1P08833 259 aaPredicted RBP16.23■□□□□ 0.19
USP28-208ENST00000540438 ZNF30P17039 623 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 FEN1P39748 380 aaKnown RBP16.23■□□□□ 0.19
USP28-208ENST00000540438 RAD23AP54725 363 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 CEP44Q9C0F1 390 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 SPATA6Q9NWH7 488 aaPredicted RBP16.23■□□□□ 0.19
USP28-208ENST00000540438 DENND4CQ5VZ89 1909 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 BCAS1O75363 584 aaPredicted RBP16.23■□□□□ 0.19
USP28-208ENST00000540438 HOXB9P17482 250 aaPredicted RBP16.23■□□□□ 0.19
USP28-208ENST00000540438 PRLHRP49683 370 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 RPP38P78345 283 aaKnown RBP16.23■□□□□ 0.19
USP28-208ENST00000540438 TP53BP2Q13625 1128 aa16.23■□□□□ 0.19
USP28-208ENST00000540438 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms