RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SYCP3Q8IZU3 236 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ZNF444Q8N0Y2 327 aaPredicted RBP2.38□□□□□ -2.03
CD44-238ENST00000534296 DCLK2Q8N568 766 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 FAM89BQ8N5H3 189 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 KLHDC1Q8N7A1 406 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 TCEANCQ8N8B7 351 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 GBP7Q8N8V2 638 aaPredicted RBP2.38□□□□□ -2.03
CD44-238ENST00000534296 KIAA0895Q8NCT3 520 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 OR5T2Q8NGG2 359 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 OR4D10Q8NGI6 311 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 CKAP2Q8WWK9 683 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 RIT1Q92963 219 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 AZIN2Q96A70 460 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 CFAP36Q96G28 342 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 KLHL5Q96PQ7 755 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 PARK7Q99497 189 aaKnown RBP2.38□□□□□ -2.03
CD44-238ENST00000534296 HNRNPABQ99729 332 aaKnown RBP2.38□□□□□ -2.03
CD44-238ENST00000534296 PKP2Q99959 881 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 C17orf62Q9BQA9 187 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 TRIM7Q9C029 511 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 NAPBQ9H115 298 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 CUEDC2Q9H467 287 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 Q9H8V8 135 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 C3orf14Q9HBI5 128 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 TUFT1Q9NNX1 390 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 DNAJC4Q9NNZ3 241 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 MAN2C1Q9NTJ4 1040 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 CHCHD3Q9NX63 227 aaKnown RBP2.38□□□□□ -2.03
CD44-238ENST00000534296 NUDT4Q9NZJ9 180 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 NSG2Q9Y328 171 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 CSNK1G3Q9Y6M4 447 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ZHX2Q9Y6X8 837 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ACEP12821 1306 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 RNF123Q5XPI4 1314 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 NPHP3Q7Z494 1330 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 LRRD1A4D1F6 860 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 FAM149AA5PLN7 773 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 CASTOR2A6NHX0 329 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 SDR42E2A6NKP2 422 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 A8MVM7 634 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 C17orf105B2RV13 164 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 CTDSPLO15194 276 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 FCGR3BO75015 233 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 IGHEP01854 428 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ATP1B1P05026 303 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 YES1P07947 543 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ZFYP08048 801 aaPredicted RBP2.37□□□□□ -2.03
CD44-238ENST00000534296 GSTA2P09210 222 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 FERP16591 822 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 CYP2A7P20853 494 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ELAVL4P26378 380 aaKnown RBP2.37□□□□□ -2.03
CD44-238ENST00000534296 CTNNB1P35222 781 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 OPRL1P41146 370 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 SLC1A3P43003 542 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 PTGER3P43115 390 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 NKX2-1P43699 371 aaPredicted RBP2.37□□□□□ -2.03
CD44-238ENST00000534296 CDX1P47902 265 aaPredicted RBP2.37□□□□□ -2.03
CD44-238ENST00000534296 LEPRP48357 1165 aaKnown RBP2.37□□□□□ -2.03
CD44-238ENST00000534296 CLDN17P56750 224 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 STX1BP61266 288 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ST8SIA6P61647 398 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ENPP2Q13822 863 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 SLMAPQ14BN4 828 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 RPS6KA1Q15418 735 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 PTPN14Q15678 1187 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ZNF74Q16587 644 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 MOGAT2Q3SYC2 334 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 IFI44LQ53G44 452 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 SLC25A53Q5H9E4 307 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ARMCX4Q5H9R4 360 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 SPDYCQ5MJ68 293 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 KRTAP5-1Q6L8H4 278 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 UGT3A1Q6NUS8 523 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 SLC25A47Q6Q0C1 308 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 PRSS55Q6UWB4 352 aaPredicted RBP2.37□□□□□ -2.03
CD44-238ENST00000534296 KIF6Q6ZMV9 814 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 TMEM182Q6ZP80 229 aaPredicted RBP2.37□□□□□ -2.03
CD44-238ENST00000534296 PIGWQ7Z7B1 504 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ZER1Q7Z7L7 766 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ANKRD46Q86W74 232 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 MEX3DQ86XN8 651 aaKnown RBP2.37□□□□□ -2.03
CD44-238ENST00000534296 SPAG16Q8N0X2 631 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 METTL4Q8N3J2 472 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 OR7G3Q8NG95 312 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 OR1L3Q8NH93 324 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 OLIG1Q8TAK6 271 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 CHURC1Q8WUH1 139 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 GATAD1Q8WUU5 269 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 P2RX5Q93086 422 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 MR1Q95460 341 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 CDKN2AIPNLQ96HQ2 116 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 C10orf90Q96M02 699 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 NECTIN4Q96NY8 510 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 TSSK2Q96PF2 358 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 GAL3ST4Q96RP7 486 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 PSMB7Q99436 277 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 CDCA3Q99618 268 aaPredicted RBP2.37□□□□□ -2.03
CD44-238ENST00000534296 IL12RB2Q99665 862 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 UBAC1Q9BSL1 405 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ALDH8A1Q9H2A2 487 aaPredicted RBP2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms