RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TEFQ10587 303 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 SRSF9Q13242 221 aaKnown RBP eCLIP3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 EFTUD2Q15029 972 aaKnown RBP eCLIP3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 PPA1Q15181 289 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 TMEM30BQ3MIR4 351 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 DHRS11Q6UWP2 260 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 Q6ZSR9 355 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 RAPH1Q70E73 1250 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 SPC24Q8NBT2 197 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 MAPK15Q8TD08 544 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 AP2M1Q96CW1 435 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 NEDD4LQ96PU5 975 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 RASL10BQ96S79 203 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 LITAFQ99732 161 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 PRMT1Q99873 361 aaKnown RBP3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 ZNF559Q9BR84 538 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 TDRD1Q9BXT4 1180 aaKnown RBP3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 KRTAP1-5Q9BYS1 174 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 WDR13Q9H1Z4 485 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 DPEP2Q9H4A9 486 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 C5orf66Q9H5L9 145 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 RNPEPL1Q9HAU8 725 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 SPG21Q9NZD8 308 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 STX8Q9UNK0 236 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 MRPS28Q9Y2Q9 187 aaKnown RBP3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 PYGO1Q9Y3Y4 419 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 KIAA1210Q9ULL0 1709 aa3.55□□□□□ -1.84
HMGB1P28-201ENST00000507778 SMIM30A4D0T7 59 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 FAM149AA5PLN7 773 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 C15orf61A6NNL5 157 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 M0R296 226 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 NR5A2O00482 541 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 SAP30O75446 220 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 GRAP2O75791 330 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 BAG2O95816 211 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 IGLV1-44P01699 117 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 MT-ND2P03891 347 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 ZNF26P17031 533 aaPredicted RBP3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 SOX3P41225 446 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 HNF4AP41235 474 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 CASP3P42574 277 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 MAGEB1P43366 347 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 NR0B1P51843 470 aaKnown RBP3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 XGP55808 180 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 KIAA1024LP59773 190 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 SLC34A1Q06495 639 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 CDH18Q13634 790 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 DUSP5Q16690 384 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 C2orf76Q3KRA6 126 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 SLC39A12Q504Y0 691 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 SLC10A5Q5PT55 438 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 ADAMTSL4-AS1Q5T5F5 129 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 AGAP6Q5VW22 663 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 PWWP2BQ6NUJ5 590 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 BHLHB9Q6PI77 547 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 FIP1L1Q6UN15 594 aaKnown RBP3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 MACC1Q6ZN28 852 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 NOTCH2NLQ7Z3S9 236 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 C5orf24Q7Z6I8 188 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 CARNMT1Q8N4J0 409 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 OR6S1Q8NH40 331 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 HCAR2Q8TDS4 363 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 ZNF486Q96H40 463 aaPredicted RBP3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 PANX3Q96QZ0 392 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 IL12RB2Q99665 862 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 RBM4Q9BWF3 364 aaKnown RBP3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 CLEC7AQ9BXN2 247 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 MRPL9Q9BYD2 267 aaKnown RBP3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 BARHL1Q9BZE3 327 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 AKIRIN1Q9H9L7 192 aaPredicted RBP3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 FGF22Q9HCT0 170 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 MRPL17Q9NRX2 175 aaKnown RBP3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 POLKQ9UBT6 870 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 POMT2Q9UKY4 750 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 PPP1R3CQ9UQK1 317 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 ANGPTL3Q9Y5C1 460 aa3.54□□□□□ -1.84
HMGB1P28-201ENST00000507778 A0A087X0K7 114 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 A0A0A6YYC8 382 aaPredicted RBP3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 A0A1W2PR80 420 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 MAGEB16A2A368 324 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 TRIM64A6NGJ6 449 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 TRIM64BA6NI03 449 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 I3L1I5 382 aaPredicted RBP3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 SLC1A7O00341 560 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 MAGEC1O60732 1142 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 KINO60870 393 aaKnown RBP3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 HLA-FP30511 346 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 SERPINH1P50454 418 aaKnown RBP3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 FKBP1BP68106 108 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 GUCY2DQ02846 1103 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 UBXN1Q04323 297 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 TRA2AQ13595 282 aaKnown RBP eCLIP3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 TAB1Q15750 504 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 ACKR1Q16570 336 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 SGCBQ16585 318 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 HLA-BQ31612 363 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 AARDQ4LEZ3 155 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 C15orf52Q6ZUT6 534 aaKnown RBP3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 ZNF329Q86UD4 541 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms