RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	KLK7	P49862	253 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	PEX5	P50542	639 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	DNA2	P51530	1060 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	MAZ	P56270	477 aa	Known RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	RHOA	P61586	193 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	SNRPD1	P62314	119 aa	Known RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	CCL7	P80098	99 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	EFNB1	P98172	346 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	PSG6	Q00889	435 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	OGDH	Q02218	1023 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	PPARD	Q03181	441 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	SLC20A2	Q08357	652 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	ABHD18	Q0P651	414 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	GAB1	Q13480	694 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	CDO1	Q16878	200 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	KLHL40	Q2TBA0	621 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	MYLK3	Q32MK0	819 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	BEAN1	Q3B7T3	259 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	PARP15	Q460N3	678 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	TMEM52B	Q4KMG9	183 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	C14orf28	Q4W4Y0	310 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	PLEKHS1	Q5SXH7	462 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	ZNF362	Q5T0B9	420 aa	Predicted RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	MTFR2	Q6P444	385 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	LRRC31	Q6UY01	552 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	GDPD4	Q6W3E5	623 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	STRADA	Q7RTN6	431 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	POLN	Q7Z5Q5	900 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	VSIG1	Q86XK7	387 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	GALNT13	Q8IUC8	556 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	ARHGAP12	Q8IWW6	846 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	ADGRF3	Q8IZF5	1079 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	PYROXD2	Q8N2H3	581 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	C17orf53	Q8N3J3	647 aa	Predicted RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	FBXO39	Q8N4B4	442 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	TMEM116	Q8NCL8	245 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981		Q8NFD4	153 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	CCL4L1	Q8NHW4	92 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	FAM172A	Q8WUF8	416 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	KCNJ9	Q92806	393 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	TSACC	Q96A04	125 aa	Predicted RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	INTS12	Q96CB8	462 aa	Known RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	KLHL29	Q96CT2	875 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	ZNF764	Q96H86	408 aa	Predicted RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	LURAP1	Q96LR2	239 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	C5orf34	Q96MH7	638 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	GFM1	Q96RP9	751 aa	Known RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	PEBP4	Q96S96	227 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	PCDHB18P	Q96TA0	734 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	C11orf70	Q9BRQ4	267 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	SYT11	Q9BT88	431 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	DPCD	Q9BVM2	203 aa	Predicted RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	C1QTNF7	Q9BXJ2	289 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	NDST4	Q9H3R1	872 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	LRRN3	Q9H3W5	708 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	GALNT9	Q9HCQ5	603 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	MRPL40	Q9NQ50	206 aa	Known RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	CCDC177	Q9NQR7	707 aa	Predicted RBP	4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	C5AR2	Q9P296	337 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	OR12D3	Q9UGF7	316 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	RNF114	Q9Y508	228 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	RNF215	Q9Y6U7	377 aa		4.15	□□□□□ -1.75
VPS52-222	ENST00000495981	SHANK1	Q9Y566	2161 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	PCSK5	Q92824	1860 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	FAM237B	A0A1B0GVD1	139 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	TRAFD1	O14545	582 aa	Predicted RBP	4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	PROM1	O43490	865 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	NUDT21	O43809	227 aa	Known RBP	4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	PRAMEF11	O60813	436 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	POP4	O95707	220 aa	Known RBP	4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	ALDOA	P04075	364 aa	Known RBP	4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	EIF2S1	P05198	315 aa	Known RBP	4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	APOA4	P06727	396 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	TUBB	P07437	444 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	PLEK	P08567	350 aa	Predicted RBP	4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	PRKAR1A	P10644	381 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	THRA	P10827	490 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	UNG	P13051	313 aa	Predicted RBP	4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	CCL4	P13236	92 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	CD82	P27701	267 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	OAS2	P29728	719 aa	Known RBP	4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	SDC4	P31431	198 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	DIO1	P49895	249 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	AGTR2	P50052	363 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	SUOX	P51687	545 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	EIF3B	P55884	814 aa	Known RBP	4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	SRP54	P61011	504 aa	Known RBP	4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	OLR1	P78380	273 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	CDR2	Q01850	454 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	ELP6	Q0PNE2	266 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	KLRB1	Q12918	225 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	SGCG	Q13326	291 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	CBFB	Q13951	182 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	SCARB2	Q14108	478 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	SEMA3A	Q14563	771 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	ELOC	Q15369	112 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	CYTH1	Q15438	398 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	CNGA3	Q16281	694 aa		4.14	□□□□□ -1.75
VPS52-222	ENST00000495981	SLC18A3	Q16572	532 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms