RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 RIC8BQ9NVN3 520 aa18.49■□□□□ 0.55
USP39-218ENST00000493829 G3BP2Q9UN86 482 aaKnown RBP18.49■□□□□ 0.55
USP39-218ENST00000493829 PLCL2Q9UPR0 1127 aa18.49■□□□□ 0.55
USP39-218ENST00000493829 FAM186AA6NE01 2351 aa18.49■□□□□ 0.55
USP39-218ENST00000493829 E9PBE3 544 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 FOXE1O00358 373 aaPredicted RBP18.48■□□□□ 0.55
USP39-218ENST00000493829 NDUFAB1O14561 156 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 SNX3O60493 162 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 KLHL41O60662 606 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 CLEC3AO75596 197 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 CSRP1P21291 193 aaKnown RBP18.48■□□□□ 0.55
USP39-218ENST00000493829 SERPINB1P30740 379 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 GABRA4P48169 554 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 SNRPNP63162 240 aaKnown RBP18.48■□□□□ 0.55
USP39-218ENST00000493829 RPL38P63173 70 aaKnown RBP18.48■□□□□ 0.55
USP39-218ENST00000493829 FOXM1Q08050 763 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 RGS1Q08116 209 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 TUBB3Q13509 450 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 WASHC2DQ5SRD0 308 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 HES3Q5TGS1 186 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 ACAD11Q709F0 780 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 GBP7Q8N8V2 638 aaPredicted RBP18.48■□□□□ 0.55
USP39-218ENST00000493829 TRPV3Q8NET8 790 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 BCAS4Q8TDM0 211 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 THAP11Q96EK4 314 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 CMTM7Q96FZ5 175 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 SIKE1Q9BRV8 207 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 C1orf50Q9BV19 199 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 SORBS1Q9BX66 1292 aaKnown RBP18.48■□□□□ 0.55
USP39-218ENST00000493829 AICDAQ9GZX7 198 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 BRF2Q9HAW0 419 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 TCF7L2Q9NQB0 619 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 PFDN4Q9NQP4 134 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 ADGRE2Q9UHX3 823 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 CCL27Q9Y4X3 112 aa18.48■□□□□ 0.55
USP39-218ENST00000493829 C4orf51C9J302 202 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 RTCAO00442 366 aaKnown RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 LSM1O15116 133 aaKnown RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 B3GALT4O96024 378 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 ATXN8OSP0DMR3 200 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 RAP1GDS1P52306 607 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 ZFP36L1Q07352 338 aaKnown RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 HYAL2Q12891 473 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 ATP6AP1LQ52LC2 224 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 C10orf62Q5T681 223 aaPredicted RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 KHDRBS2Q5VWX1 349 aaKnown RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 APIPQ96GX9 242 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 TMEM74Q96NL1 305 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 SERPINI1Q99574 410 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 SPRTNQ9H040 489 aaPredicted RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 LRTM1Q9HBL6 345 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 OCIAD1Q9NX40 245 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 VPS29Q9UBQ0 182 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 RUVBL1Q9Y265 456 aaKnown RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 TSC22D4Q9Y3Q8 395 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 EFCAB7A8K855 629 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 SLC30A4O14863 429 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 TM4SF5O14894 197 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 CSO75390 466 aaKnown RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 SEC22BO75396 215 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 ZNF888P0CJ79 500 aaPredicted RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 HSD3B1P14060 373 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 PTX3P26022 381 aaPredicted RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 HSD3B2P26439 372 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 GSTM2P28161 218 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 CSTF2P33240 577 aaKnown RBP eCLIP18.47■□□□□ 0.55
USP39-218ENST00000493829 PLA2G16P53816 162 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 RAB8AP61006 207 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 RELAQ04206 551 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 AP5B1Q2VPB7 878 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 LSM12Q3MHD2 195 aaKnown RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 TMEM198Q66K66 360 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 RNF165Q6ZSG1 346 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 ALYREFQ86V81 257 aaKnown RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 C1orf52Q8N6N3 182 aaKnown RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 CAMKVQ8NCB2 501 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 OR1L3Q8NH93 324 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 NT5CQ8TCD5 201 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 OR6C1Q96RD1 312 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 CCT7Q99832 543 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 C17orf62Q9BQA9 187 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 EBPLQ9BY08 206 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 REXO4Q9GZR2 422 aaKnown RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 FGF21Q9NSA1 209 aa18.47■□□□□ 0.55
USP39-218ENST00000493829 MRPS2Q9Y399 296 aaKnown RBP18.47■□□□□ 0.55
USP39-218ENST00000493829 LRIT2A6NDA9 550 aa18.46■□□□□ 0.55
USP39-218ENST00000493829 ERI3O43414 337 aaKnown RBP18.46■□□□□ 0.55
USP39-218ENST00000493829 OR2B3O76000 313 aa18.46■□□□□ 0.55
USP39-218ENST00000493829 RSL1D1O76021 490 aaKnown RBP18.46■□□□□ 0.55
USP39-218ENST00000493829 MT-CO3P00414 261 aa18.46■□□□□ 0.55
USP39-218ENST00000493829 GBAP04062 536 aa18.46■□□□□ 0.55
USP39-218ENST00000493829 SERPINA6P08185 405 aa18.46■□□□□ 0.55
USP39-218ENST00000493829 ZNF33BQ06732 778 aa18.46■□□□□ 0.55
USP39-218ENST00000493829 TRA2AQ13595 282 aaKnown RBP eCLIP18.46■□□□□ 0.55
USP39-218ENST00000493829 RSPO4Q2I0M5 234 aaPredicted RBP18.46■□□□□ 0.55
USP39-218ENST00000493829 GKAP1Q5VSY0 366 aaPredicted RBP18.46■□□□□ 0.55
USP39-218ENST00000493829 RIPOR1Q6ZS17 1223 aa18.46■□□□□ 0.55
USP39-218ENST00000493829 CHSY3Q70JA7 882 aa18.46■□□□□ 0.55
USP39-218ENST00000493829 FNDC5Q8NAU1 212 aa18.46■□□□□ 0.55
USP39-218ENST00000493829 TM4SF19Q96DZ7 209 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms