RNA–Protein interactions for RNA: ENST00000488087.1

ECHDC1-217, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 3

Gene ECHDC1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-217ENST00000488087 SH3BGRP55822 239 aaPredicted RBP3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 MAZP56270 477 aaKnown RBP3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 HERV-K104P61576 105 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 ACTN3Q08043 901 aaPredicted RBP3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 MZT1Q08AG7 82 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 TAF10Q12962 218 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 DYNC1I2Q13409 638 aaKnown RBP3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 ITGA7Q13683 1181 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 KRT81Q14533 505 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 SQLEQ14534 574 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 SNCBQ16143 134 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 UGCGQ16739 394 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 PHKG1Q16816 387 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 FAM174BQ3ZCQ3 159 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 CCDC40Q4G0X9 1142 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 TATDN1Q6P1N9 297 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 SUSD1Q6UWL2 747 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 ENPP7Q6UWV6 458 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 PIGZQ86VD9 579 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 MMD2Q8IY49 270 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 TEX9Q8N6V9 391 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 GBP7Q8N8V2 638 aaPredicted RBP3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 TRIM58Q8NG06 486 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 OR4K1Q8NGD4 311 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 OR8H1Q8NGG4 311 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 OR52N5Q8NH56 324 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 LGALS12Q96DT0 336 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 FAM20AQ96MK3 541 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 CARD6Q9BX69 1037 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 FAM129AQ9BZQ8 928 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 NAT10Q9H0A0 1025 aaKnown RBP3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 C2orf40Q9H1Z8 148 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 FZD8Q9H461 694 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 DCTPP1Q9H773 170 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 P4HTMQ9NXG6 502 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 POLLQ9UGP5 575 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 PA2G4Q9UQ80 394 aaKnown RBP3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 TNNQ9UQP3 1299 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 WDR37Q9Y2I8 494 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 KCNK7Q9Y2U2 307 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 ABCC3O15438 1527 aa3.47□□□□□ -1.85
ECHDC1-217ENST00000488087 NEURL4Q96JN8 1562 aa3.46□□□□□ -1.85
ECHDC1-217ENST00000488087 TTC21AQ8NDW8 1320 aa3.46□□□□□ -1.85
ECHDC1-217ENST00000488087 CDHR2Q9BYE9 1310 aa3.46□□□□□ -1.85
ECHDC1-217ENST00000488087 KDM6AO15550 1401 aaPredicted RBP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 CPSF1Q10570 1443 aaKnown RBP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 TRAPPC8Q9Y2L5 1435 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 URB2Q14146 1524 aaKnown RBP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 LMTK2Q8IWU2 1503 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 GOLGA6L7A0A1B0GV03 622 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 C2orf81A6NN90 581 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 GOLGA6L19H0YKK7 550 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 PSMD14O00487 310 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 ARPC2O15144 300 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 STX6O43752 255 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 ZG16O60844 167 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 E2F6O75461 281 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 CDC123O75794 336 aaPredicted RBP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 KIAA0754O94854 1291 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 MOCS3O95396 460 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 CSN3P07498 182 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 VIMP08670 466 aaKnown RBP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 IGHV4-31P0DP07 118 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 GHRP10912 638 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 EPCAMP16422 314 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 GNB3P16520 340 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 CSTF2P33240 577 aaKnown RBP eCLIP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 NR0B1P51843 470 aaKnown RBP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 CRIP2P52943 208 aaPredicted RBP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 GNB1P62873 340 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 DLK1P80370 383 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 KLC1Q07866 573 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 XRCC4Q13426 336 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 RBM39Q14498 530 aaKnown RBP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 CASP8Q14790 479 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 STX1AQ16623 288 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 LACTB2Q53H82 288 aaPredicted RBP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 SHEQ5VZ18 495 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 ARHGAP17Q68EM7 881 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 SPATA19Q7Z5L4 167 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 PHLDB2Q86SQ0 1253 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 GLRX5Q86SX6 157 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 DZIP1Q86YF9 867 aaKnown RBP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 C4orf19Q8IY42 314 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 NIPA2Q8N8Q9 360 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 SMYD1Q8NB12 490 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 TMEM178AQ8NBL3 297 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 OR13C3Q8NGS6 347 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 OR4C3Q8NH37 302 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 KCNE4Q8WWG9 221 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 HPSE2Q8WWQ2 592 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 PIGBQ92521 554 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 FAM71F1Q96KD3 344 aaPredicted RBP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 LRR1Q96L50 414 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 CCDC114Q96M63 670 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 LITAFQ99732 161 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 INPP5KQ9BT40 448 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 GTPBP2Q9BX10 602 aaKnown RBP3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 KRTAP4-4Q9BYR3 166 aa3.46□□□□□ -1.86
ECHDC1-217ENST00000488087 BARHL1Q9BZE3 327 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms