RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 HSF2BPO75031 334 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 MT-ATP6P00846 226 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 TGFAP01135 160 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 IGHV4-59P01825 116 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 ATP1B1P05026 303 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 ALPLP05186 524 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 IGKV2-30P06310 120 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 PAX1P15863 534 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 ZNF18P17022 549 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 RPA1P27694 616 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 CAMLGP49069 296 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 HNRNPFP52597 415 aaKnown RBP4.63□□□□□ -1.67
UPF3B-203ENST00000478840 MYL7Q01449 175 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 GPR17Q13304 367 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 MSLNQ13421 630 aaPredicted RBP4.63□□□□□ -1.67
UPF3B-203ENST00000478840 TAF7Q15545 349 aaPredicted RBP4.63□□□□□ -1.67
UPF3B-203ENST00000478840 CCDC6Q16204 474 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 EXT1Q16394 746 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 ZNF542PQ5EBM4 170 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 HERC4Q5GLZ8 1057 aaPredicted RBP4.63□□□□□ -1.67
UPF3B-203ENST00000478840 SLC25A53Q5H9E4 307 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 NADSYN1Q6IA69 706 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 PRSS57Q6UWY2 283 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 ABRAXAS1Q6UWZ7 409 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 BTN2A1Q7KYR7 527 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 ISCA2Q86U28 154 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 ZNF575Q86XF7 245 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 STHQ8IWL8 128 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 LMNTD2Q8IXW0 634 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 ZNF444Q8N0Y2 327 aaPredicted RBP4.63□□□□□ -1.67
UPF3B-203ENST00000478840 MARVELD2Q8N4S9 558 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 GBP7Q8N8V2 638 aaPredicted RBP4.63□□□□□ -1.67
UPF3B-203ENST00000478840 ZNF383Q8NA42 475 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 ZBTB44Q8NCP5 570 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 SLC24A4Q8NFF2 622 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 RFT1Q96AA3 541 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 LMLNQ96KR4 655 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 NSMCE2Q96MF7 247 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 ZPBPQ9BS86 351 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 LRRC2Q9BYS8 371 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 DDX47Q9H0S4 455 aaKnown RBP4.63□□□□□ -1.67
UPF3B-203ENST00000478840 C6orf106Q9H6K1 298 aaPredicted RBP4.63□□□□□ -1.67
UPF3B-203ENST00000478840 RPF1Q9H9Y2 349 aaKnown RBP4.63□□□□□ -1.67
UPF3B-203ENST00000478840 OR6C2Q9NZP2 312 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 PILRBQ9UKJ0 227 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 TMCC3Q9ULS5 477 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 SH3GLB1Q9Y371 365 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 TRIP12Q14669 1992 aaPredicted RBP4.62□□□□□ -1.67
UPF3B-203ENST00000478840 PLSCR5A0PG75 271 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 SERINC4A6NH21 518 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 E5RGE8 158 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 NDC80O14777 642 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 PSMD3O43242 534 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 SSX5O60225 188 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 GUCA1CO95843 209 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 GAS8O95995 478 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 CDK4P11802 303 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 CCND2P30279 289 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 THBS3P49746 956 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 TNFSF10P50591 281 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 ZXDBP98169 803 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 GALK2Q01415 458 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 PPP1R8Q12972 351 aaKnown RBP4.62□□□□□ -1.67
UPF3B-203ENST00000478840 SRSF9Q13242 221 aaKnown RBP eCLIP4.62□□□□□ -1.67
UPF3B-203ENST00000478840 RBM39Q14498 530 aaKnown RBP4.62□□□□□ -1.67
UPF3B-203ENST00000478840 CCDC40Q4G0X9 1142 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 PIGZQ86VD9 579 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 KIRREL3Q8IZU9 778 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 GPC2Q8N158 579 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 FAM89BQ8N5H3 189 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 KBTBD3Q8NAB2 608 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 RNF149Q8NC42 400 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 OR7A2PQ8NGA2 310 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 FCAMRQ8WWV6 532 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 LYZL4Q96KX0 146 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 MEIS3Q99687 375 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 SPAG8Q99932 426 aaPredicted RBP4.62□□□□□ -1.67
UPF3B-203ENST00000478840 PSD2Q9BQI7 771 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 NTMT1Q9BV86 223 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 THAP2Q9H0W7 228 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 UPF2Q9HAU5 1272 aaKnown RBP4.62□□□□□ -1.67
UPF3B-203ENST00000478840 GPN1Q9HCN4 374 aaPredicted RBP4.62□□□□□ -1.67
UPF3B-203ENST00000478840 POLE3Q9NRF9 147 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 PANK4Q9NVE7 773 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 RNF7Q9UBF6 113 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 C19orf25Q9UFG5 118 aaPredicted RBP4.62□□□□□ -1.67
UPF3B-203ENST00000478840 PRDM4Q9UKN5 801 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 TNNQ9UQP3 1299 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 NSG2Q9Y328 171 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 FAM205AQ6ZU69 1335 aa4.62□□□□□ -1.67
UPF3B-203ENST00000478840 LACTBL1A8MY62 500 aa4.61□□□□□ -1.67
UPF3B-203ENST00000478840 K7EPI3 171 aa4.61□□□□□ -1.67
UPF3B-203ENST00000478840 CPLX1O14810 134 aa4.61□□□□□ -1.67
UPF3B-203ENST00000478840 STBD1O95210 358 aa4.61□□□□□ -1.67
UPF3B-203ENST00000478840 BMP15O95972 392 aa4.61□□□□□ -1.67
UPF3B-203ENST00000478840 PDGFBP01127 241 aaPredicted RBP4.61□□□□□ -1.67
UPF3B-203ENST00000478840 DNAJB1P25685 340 aa4.61□□□□□ -1.67
UPF3B-203ENST00000478840 MARK3P27448 753 aa4.61□□□□□ -1.67
UPF3B-203ENST00000478840 KIF5BP33176 963 aa4.61□□□□□ -1.67
UPF3B-203ENST00000478840 DNA2P51530 1060 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms