RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SGSM1	Q2NKQ1	1148 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	SMU1	Q2TAY7	513 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	ODF2	Q5BJF6	829 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	FGD3	Q5JSP0	725 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	SLC10A5	Q5PT55	438 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	GFI1B	Q5VTD9	330 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	DHRS11	Q6UWP2	260 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	CROCCP3	Q8IVE0	287 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	KLHDC8A	Q8IYD2	350 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	ADAD2	Q8NCV1	583 aa	Known RBP	3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	OR4D10	Q8NGI6	311 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	HCAR2	Q8TDS4	363 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	SAP25	Q8TEE9	199 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	CASP10	Q92851	521 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	NXPE2	Q96DL1	559 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	CLEC7A	Q9BXN2	247 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	NACAP1	Q9BZK3	213 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	MMADHC	Q9H3L0	296 aa	Predicted RBP	3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	RPF1	Q9H9Y2	349 aa	Known RBP	3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	BARHL2	Q9NY43	387 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	HACD3	Q9P035	362 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	MRPS28	Q9Y2Q9	187 aa	Known RBP	3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	PCDHGA1	Q9Y5H4	931 aa		3.31	□□□□□ -1.88
PTCD3-209	ENST00000472044	FAM149A	A5PLN7	773 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	NKX6-3	A6NJ46	265 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044		A8MVM7	634 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	SLC1A7	O00341	560 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	KIF5C	O60282	957 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	ACSL4	O60488	711 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	ATP9A	O75110	1047 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	UROS	P10746	265 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	GOT1	P17174	413 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	VCL	P18206	1134 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	LBX1	P52954	281 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	XG	P55808	180 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	PMP22	Q01453	160 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	CDH18	Q13634	790 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	GRB14	Q14449	540 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	TMEM132D	Q14C87	1099 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	ZNF674	Q2M3X9	581 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	HLA-B	Q31612	363 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	ZFP69	Q49AA0	526 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	ZNF542P	Q5EBM4	170 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	ARMCX4	Q5H9R4	360 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	LRRC38	Q5VT99	294 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	AGAP6	Q5VW22	663 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	PM20D1	Q6GTS8	502 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	MACC1	Q6ZN28	852 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	C15orf52	Q6ZUT6	534 aa	Known RBP	3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	CCDC91	Q7Z6B0	441 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	UNC45B	Q8IWX7	931 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	CCDC170	Q8IYT3	715 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	TDH	Q8IZJ6	230 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	FAM9B	Q8IZU0	186 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	C10orf53	Q8N6V4	93 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	KIAA0895	Q8NCT3	520 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	OR6S1	Q8NH40	331 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	CHURC1	Q8WUH1	139 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	C2orf48	Q96LS8	159 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	FAM218A	Q96MZ4	157 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	ZNF300	Q96RE9	604 aa	Predicted RBP	3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	IDI2	Q9BXS1	227 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	KRTAP2-2	Q9BYT5	123 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	HOXD1	Q9GZZ0	328 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	RSPH9	Q9H1X1	276 aa	Predicted RBP	3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	RAB9B	Q9NP90	201 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	PNPLA3	Q9NST1	481 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	KLHL8	Q9P2G9	620 aa	Predicted RBP	3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	CACNG5	Q9UF02	275 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	GMEB2	Q9UKD1	530 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	ANGPTL3	Q9Y5C1	460 aa		3.3	□□□□□ -1.88
PTCD3-209	ENST00000472044	ACE	P12821	1306 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044		A0A087WZ39	114 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044		E5RGE8	158 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	RNF103	O00237	685 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	ZNF195	O14628	629 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	PGRMC2	O15173	223 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	TTI1	O43156	1089 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	ZG16	O60844	167 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	SOCS5	O75159	536 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	RTN2	O75298	545 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	ZNF821	O75541	412 aa	Predicted RBP	3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	NXPH2	O95156	264 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	GOSR1	O95249	250 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	MT-ND2	P03891	347 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	EDNRA	P25101	427 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	CASP3	P42574	277 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	CLCN4	P51793	760 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	ATP12A	P54707	1039 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	IRX4	P78413	519 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	CYCS	P99999	105 aa	Known RBP	3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	SLC34A1	Q06495	639 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	ABR	Q12979	859 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	RCN2	Q14257	317 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	TMEM187	Q14656	261 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	FAM106A	Q4KMX7	169 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	WLS	Q5T9L3	541 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044		Q6ZRP5	223 aa		3.29	□□□□□ -1.88
PTCD3-209	ENST00000472044	C5orf24	Q7Z6I8	188 aa		3.29	□□□□□ -1.88

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