RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 RHBGQ9H310 441 aa11.37□□□□□ -0.59
VPS13D-204ENST00000469054 GPN2Q9H9Y4 310 aaPredicted RBP11.37□□□□□ -0.59
VPS13D-204ENST00000469054 TMBIM4Q9HC24 238 aa11.37□□□□□ -0.59
VPS13D-204ENST00000469054 SSU72Q9NP77 194 aaKnown RBP11.37□□□□□ -0.59
VPS13D-204ENST00000469054 SEMA4BQ9NPR2 832 aaPredicted RBP11.37□□□□□ -0.59
VPS13D-204ENST00000469054 ACSS2Q9NR19 701 aa11.37□□□□□ -0.59
VPS13D-204ENST00000469054 IL17BQ9UHF5 180 aa11.37□□□□□ -0.59
VPS13D-204ENST00000469054 KCND3Q9UK17 655 aa11.37□□□□□ -0.59
VPS13D-204ENST00000469054 CDC14AQ9UNH5 594 aa11.37□□□□□ -0.59
VPS13D-204ENST00000469054 SLC22A7Q9Y694 548 aa11.37□□□□□ -0.59
VPS13D-204ENST00000469054 PCM1Q15154 2024 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 ACACAQ13085 2346 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 SDK2Q58EX2 2172 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 URADA6NGE7 173 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 C9J4A7 227 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 H0YIV9 168 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 AGPSO00116 658 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 PPP6CO00743 305 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 CLDN9O95484 217 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 OTCP00480 354 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 CAPN1P07384 714 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 RAB40ALP0C0E4 278 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 TSPAN8P19075 237 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 ITGAXP20702 1163 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 ARL1P40616 181 aaPredicted RBP11.36□□□□□ -0.59
VPS13D-204ENST00000469054 UCNP55089 124 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 DNAJB13P59910 316 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 NAA20P61599 178 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 SNRPNP63162 240 aaKnown RBP11.36□□□□□ -0.59
VPS13D-204ENST00000469054 HYAL2Q12891 473 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 TRAF3Q13114 568 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 CPSF6Q16630 551 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS13D-204ENST00000469054 FAM198BQ6UWH4 519 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 VN1R5Q7Z5H4 357 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 MILR1Q7Z6M3 343 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 C10orf107Q8IVU9 208 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 OR7G3Q8NG95 312 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 TRPC4APQ8TEL6 797 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.36□□□□□ -0.59
VPS13D-204ENST00000469054 CCT6BQ92526 530 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 CDK15Q96Q40 435 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 FAM117AQ9C073 453 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 SLC6A16Q9GZN6 736 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 ZNF304Q9HCX3 659 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 SLC22A11Q9NSA0 550 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 OXSMQ9NWU1 459 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 IFT80Q9P2H3 777 aaPredicted RBP11.36□□□□□ -0.59
VPS13D-204ENST00000469054 SLC17A7Q9P2U7 560 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 FARSAQ9Y285 508 aaKnown RBP11.36□□□□□ -0.59
VPS13D-204ENST00000469054 MRPS2Q9Y399 296 aaKnown RBP11.36□□□□□ -0.59
VPS13D-204ENST00000469054 RNF11Q9Y3C5 154 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 PCDHGA6Q9Y5G7 932 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 PCDHGA11Q9Y5H2 935 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 MAU2Q9Y6X3 613 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 AKAP13Q12802 2813 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 FREM2Q5SZK8 3169 aa11.36□□□□□ -0.59
VPS13D-204ENST00000469054 ACACBO00763 2458 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 SPTBP11277 2137 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 CELSR3Q9NYQ7 3312 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 A0A0A6YYC8 382 aaPredicted RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 LRIT2A6NDA9 550 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 H0YIG0 161 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 I3L1I5 382 aaPredicted RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 TRIM13O60858 407 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 NSA2O95478 260 aaKnown RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 MLYCDO95822 493 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 TBX6O95947 436 aaPredicted RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 ALBP02768 609 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 CD63P08962 238 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 PCNAP12004 261 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 WT1P19544 449 aaPredicted RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 PTPN4P29074 926 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 SERPINB1P30740 379 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 AVPR1BP47901 424 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 NAGLUP54802 743 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 STXBP1P61764 594 aaKnown RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 RPS15P62841 145 aaKnown RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 SLC9A5Q14940 896 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 PCLAFQ15004 111 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 HERC3Q15034 1050 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 NCF4Q15080 339 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 RBBP7Q16576 425 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 GGTA1PQ4G0N0 100 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 ARHGAP40Q5TG30 622 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 MLIPQ5VWP3 458 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 LIPMQ5VYY2 423 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 ADNP2Q6IQ32 1131 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 MRPL14Q6P1L8 145 aaKnown RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 CCDC81Q6ZN84 652 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 COX15Q7KZN9 410 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 ABHD13Q7L211 337 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 OVCH1Q7RTY7 1134 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 AFAP1L2Q8N4X5 818 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 CCNYL1Q8N7R7 359 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 ENDOVQ8N8Q3 282 aaKnown RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 OR4F6Q8NGB9 312 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 ZCCHC10Q8TBK6 192 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 UTP15Q8TED0 518 aaKnown RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 ZNF473Q8WTR7 871 aaKnown RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 COL26A1Q96A83 441 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms