RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 MPC1LP0DKB6 136 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 HPGDP15428 266 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 HLA-FP30511 346 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CSTF2P33240 577 aaKnown RBP eCLIP7.41□□□□□ -1.22
USP54-210ENST00000466048 RCVRNP35243 200 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 FAUP35544 74 aaKnown RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 HNMTP50135 292 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 DCDC1P59894 354 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 PRKG2Q13237 762 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 OR4D1Q15615 310 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 SF1Q15637 639 aaKnown RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 ZNHIT3Q15649 155 aaPredicted RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 LPAL2Q16609 132 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 USP43Q70EL4 1123 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 ZNF765Q7L2R6 523 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CHST15Q7LFX5 561 aaPredicted RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 METTL21AQ8WXB1 218 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 ATOH1Q92858 354 aaPredicted RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 KIAA1143Q96AT1 154 aaPredicted RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 PTERQ96BW5 349 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 ZNF382Q96SR6 550 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 ZDHHC5Q9C0B5 715 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 HHATLQ9HCP6 504 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CMTM6Q9NX76 183 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 THAP10Q9P2Z0 257 aaPredicted RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 PMF1-BGLAPU3KQ54 211 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 KIAA1671Q9BY89 1806 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CPED1A4D0V7 1026 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 AQP12BA6NM10 295 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CLDN7O95471 211 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CD63P08962 238 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 PEPDP12955 493 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 ADRB3P13945 408 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 BPIP17213 487 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 SLC7A1P30825 629 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 PCBP2Q15366 365 aaKnown RBP eCLIP7.41□□□□□ -1.222e-11■■■■□ 23.5
USP54-210ENST00000466048 CHRNA6Q15825 494 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 PLA2G4EQ3MJ16 856 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 PRSS36Q5K4E3 855 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CTSL3PQ5NE16 218 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CRTC1Q6UUV9 634 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 FAM131AQ6UXB0 335 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 HACD2Q6Y1H2 254 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 AQP12AQ8IXF9 295 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CPNE9Q8IYJ1 553 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 TWIST2Q8WVJ9 160 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 IPCEF1Q8WWN9 437 aaPredicted RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 FUBP1Q96AE4 644 aaKnown RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 ZDHHC12Q96GR4 267 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CLPTM1LQ96KA5 538 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CIB1Q99828 191 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 OR2AG1Q9H205 316 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 LINC00597Q9H2U6 94 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 RDH14Q9HBH5 336 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CAPN10Q9HC96 672 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 FKBP14Q9NWM8 211 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 TOR4AQ9NXH8 423 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 NFKBIL1Q9UBC1 381 aaPredicted RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 SLC7A8Q9UHI5 535 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CORO2BQ9UQ03 480 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 CFL2Q9Y281 166 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 OARD1Q9Y530 152 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 TRBV23OR9-2A0A075B6M9 112 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 A0A1B0GTW7 788 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 TFECO14948 347 aaPredicted RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 COQ9O75208 318 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 REM1O75628 298 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 ARHGEF15O94989 841 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 ECDO95905 644 aaPredicted RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 CST1P01037 141 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 ATP1B2P14415 290 aaPredicted RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 PSMA1P25786 263 aaKnown RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 SHMT2P34897 504 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 SEPHS1P49903 392 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 MAPK12P53778 367 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 LSM3P62310 102 aaKnown RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 PLEKHS1Q5SXH7 462 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 LRRC66Q68CR7 880 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 GATAD2AQ86YP4 633 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 GALNT12Q8IXK2 581 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 FNDC5Q8NAU1 212 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 SPPL2AQ8TCT8 520 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 LMX1AQ8TE12 382 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 EEF1AKMT1Q8WVE0 214 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 SMPDL3AQ92484 453 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 UTP4Q969X6 686 aaKnown RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 LMLNQ96KR4 655 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 C12orf66Q96MD2 445 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 LENG8Q96PV6 779 aaPredicted RBP7.41□□□□□ -1.22
USP54-210ENST00000466048 ACOX2Q99424 681 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 DPYSL5Q9BPU6 564 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 TPSD1Q9BZJ3 242 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 HEBP1Q9NRV9 189 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 MMP17Q9ULZ9 603 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 ANKRD36A6QL64 1941 aa7.41□□□□□ -1.22
USP54-210ENST00000466048 TSPAN11A1L157 253 aa7.4□□□□□ -1.22
USP54-210ENST00000466048 SYNDIG1LA6NDD5 238 aa7.4□□□□□ -1.22
USP54-210ENST00000466048 ZNF99A8MXY4 864 aaPredicted RBP7.4□□□□□ -1.22
USP54-210ENST00000466048 E7ENX8 843 aa7.4□□□□□ -1.22
USP54-210ENST00000466048 HOXD12P35452 270 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms