RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 PIK3CBP42338 1070 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 CACNG1Q06432 222 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 HKDC1Q2TB90 917 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 CAPN13Q6MZZ7 669 aaPredicted RBP11.99□□□□□ -0.49
HDAC4-208ENST00000463007 NEK5Q6P3R8 708 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 UBE2R2Q712K3 238 aaPredicted RBP11.99□□□□□ -0.49
HDAC4-208ENST00000463007 TCEAL8Q8IYN2 117 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 NELL1Q92832 810 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 KCNH6Q9H252 994 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 MMP27Q9H306 513 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 ABCB9Q9NP78 766 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 IL26Q9NPH9 171 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 C11orf16Q9NQ32 467 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 MALT1Q9UDY8 824 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 NDRG4Q9ULP0 352 aaKnown RBP11.99□□□□□ -0.49
HDAC4-208ENST00000463007 FAM220BPB1ANY3 271 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 CCRL2O00421 344 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 SUV39H1O43463 412 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 ANXA5P08758 320 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 NRIP1P48552 1158 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 DEFA1P59665 94 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 DEFA3P59666 94 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 DEFB115Q30KQ5 88 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 IER5LQ5T953 404 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 CYP2U1Q7Z449 544 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 HMGN2P46Q86SG4 172 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 SIX5Q8N196 739 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 DCAF4L2Q8NA75 395 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 WDR36Q8NI36 951 aaKnown RBP11.98□□□□□ -0.49
HDAC4-208ENST00000463007 LMLNQ96KR4 655 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 TCF25Q9BQ70 676 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 TMEM246Q9BRR3 403 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 CCM2Q9BSQ5 444 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 TPT1P8Q9HAU6 139 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 ITGB1BP2Q9UKP3 347 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 KLHL20Q9Y2M5 609 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 NAALAD2Q9Y3Q0 740 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 MYOFQ9NZM1 2061 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 PCDH7O60245 1069 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 LILRB3O75022 631 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 ITGAMP11215 1152 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 SLC15A1P46059 708 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 PRMT2P55345 433 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 ELP6Q0PNE2 266 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 CHIT1Q13231 466 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 PROX2Q3B8N5 592 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 POM121L1PQ3SYA9 428 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 LEXMQ3ZCV2 418 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 ZFP69Q49AA0 526 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 ATAD3CQ5T2N8 411 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 MMAAQ8IVH4 418 aaKnown RBP11.98□□□□□ -0.49
HDAC4-208ENST00000463007 NAGSQ8N159 534 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 GLB1L3Q8NCI6 653 aaPredicted RBP11.98□□□□□ -0.49
HDAC4-208ENST00000463007 SLX1AQ9BQ83 275 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 CPNE5Q9HCH3 593 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 WBP11Q9Y2W2 641 aaKnown RBP11.98□□□□□ -0.49
HDAC4-208ENST00000463007 LRRTM2O43300 516 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 TPST2O60704 377 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 PQBP1O60828 265 aaKnown RBP11.98□□□□□ -0.49
HDAC4-208ENST00000463007 TBL1XO60907 577 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 ADORA3P0DMS8 318 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 ITGALP20701 1170 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 RPS3P23396 243 aaKnown RBP eCLIP11.98□□□□□ -0.49
HDAC4-208ENST00000463007 NOXRED1Q6NXP6 359 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 DNAJB7Q7Z6W7 309 aaPredicted RBP11.98□□□□□ -0.49
HDAC4-208ENST00000463007 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.98□□□□□ -0.49
HDAC4-208ENST00000463007 MINDY2Q8NBR6 621 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 MYLIPQ8WY64 445 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 FYTTD1Q96QD9 318 aaKnown RBP11.98□□□□□ -0.49
HDAC4-208ENST00000463007 MAP4K5Q9Y4K4 846 aa11.98□□□□□ -0.49
HDAC4-208ENST00000463007 EFCAB10A6NFE3 127 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 M0QX08 132 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 IGFBP1P08833 259 aaPredicted RBP11.97□□□□□ -0.49
HDAC4-208ENST00000463007 HIST1H2AGP0C0S8 130 aaPredicted RBP11.97□□□□□ -0.49
HDAC4-208ENST00000463007 HIST1H2ADP20671 130 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 CSKP41240 450 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 CLDN8P56748 225 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 NFATC2Q13469 925 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 ZXDCQ2QGD7 858 aaPredicted RBP11.97□□□□□ -0.49
HDAC4-208ENST00000463007 TBRG1Q3YBR2 411 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 TPGS1Q6ZTW0 290 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 VRK3Q8IV63 474 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 ZNF296Q8WUU4 475 aaPredicted RBP11.97□□□□□ -0.49
HDAC4-208ENST00000463007 HIST1H2AHQ96KK5 128 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 SMAD5Q99717 465 aaKnown RBP11.97□□□□□ -0.49
HDAC4-208ENST00000463007 HIST1H2AJQ99878 128 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 H2AFJQ9BTM1 129 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 CCNB1IP1Q9NPC3 277 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 TMEM45AQ9NWC5 275 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 SPASTQ9UBP0 616 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 CENPXA8MT69 81 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 AGAP14A8MT82 685 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 NOTOA8MTQ0 251 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 TRBC1P01850 177 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 IFI30P13284 250 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 ETFAP13804 333 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 JUNDP17535 347 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 CSNK1DP48730 415 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 RAB25P57735 213 aa11.97□□□□□ -0.49
HDAC4-208ENST00000463007 ABRQ12979 859 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms