RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-208ENST00000451893 SHANK1Q9Y566 2161 aa20.57■□□□□ 0.88
C9orf3-208ENST00000451893 COPG1Q9Y678 874 aaKnown RBP20.57■□□□□ 0.88
C9orf3-208ENST00000451893 TCP11X1B4DZS4 312 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 H7BY64 318 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 GFYI3L273 518 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 FFAR3O14843 346 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 GPR42O15529 346 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 SHOX2O60902 331 aaPredicted RBP20.56■□□□□ 0.88
C9orf3-208ENST00000451893 HPP00738 406 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 GP1BBP13224 206 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 CHN1P15882 459 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 HRH2P25021 359 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 IMPA1P29218 277 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 SERPINB8P50452 374 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 TBPL1P62380 186 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 MRPL49Q13405 166 aaKnown RBP20.56■□□□□ 0.88
C9orf3-208ENST00000451893 DSG2Q14126 1118 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 NR6A1Q15406 480 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 FAAH2Q6GMR7 532 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 PLD3Q8IV08 490 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 GPATCH11Q8N954 259 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 OR11G2Q8NGC1 345 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 SNRNP40Q96DI7 357 aaKnown RBP20.56■□□□□ 0.88
C9orf3-208ENST00000451893 APOPT1Q96IL0 206 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 VPS39Q96JC1 886 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 CCDC138Q96M89 665 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 PRAP1Q96NZ9 151 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 TRIM54Q9BYV2 358 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 MKKSQ9NPJ1 570 aaPredicted RBP20.56■□□□□ 0.88
C9orf3-208ENST00000451893 CUEDC1Q9NWM3 386 aaPredicted RBP20.56■□□□□ 0.88
C9orf3-208ENST00000451893 DCDC2Q9UHG0 476 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 PTPN13Q12923 2485 aa20.56■□□□□ 0.88
C9orf3-208ENST00000451893 A0A0A6YYC8 382 aaPredicted RBP20.55■□□□□ 0.88
C9orf3-208ENST00000451893 IGKV1-8A0A0C4DH67 115 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 I3L1I5 382 aaPredicted RBP20.55■□□□□ 0.88
C9orf3-208ENST00000451893 COPEO14579 308 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 MED26O95402 600 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 GSTA1P08263 222 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 PYGBP11216 843 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 CREB1P16220 341 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 TYK2P29597 1187 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 CRHR1P34998 444 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 MAGEA12P43365 314 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 RPS15AP62244 130 aaKnown RBP20.55■□□□□ 0.88
C9orf3-208ENST00000451893 EEF1A2Q05639 463 aaKnown RBP20.55■□□□□ 0.88
C9orf3-208ENST00000451893 SP140Q13342 867 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 EIF2S3LQ2VIR3 472 aaKnown RBP20.55■□□□□ 0.88
C9orf3-208ENST00000451893 ZNF425Q6IV72 752 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 LINC00696Q6ZRV3 163 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 C17orf64Q86WR6 236 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 KBTBD2Q8IY47 623 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 C4orf33Q8N1A6 199 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 PPP4R1Q8TF05 950 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 EEF1AKMT1Q8WVE0 214 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 C8orf44Q96CB5 159 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 C19orf60Q96EN9 201 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 LINGO1Q96FE5 620 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 OR2A5Q96R48 311 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 TMEM184CQ9NVA4 438 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 ASF1BQ9NVP2 202 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 MED16Q9Y2X0 877 aa20.55■□□□□ 0.88
C9orf3-208ENST00000451893 IDSB3KWA1 339 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 STATHP02808 62 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 CCND1P24385 295 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 POU4F1Q01851 419 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 CDC16Q13042 620 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 BMPR2Q13873 1038 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 ISLR2Q6UXK2 745 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 CYHR1Q6ZMK1 362 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 SSC4DQ8WTU2 575 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 METTL21AQ8WXB1 218 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 TSPAN17Q96FV3 270 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 IQCGQ9H095 443 aaKnown RBP20.54■□□□□ 0.88
C9orf3-208ENST00000451893 ATG10Q9H0Y0 220 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 CCDC134Q9H6E4 229 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 PARVBQ9HBI1 364 aa20.54■□□□□ 0.88
C9orf3-208ENST00000451893 ZBTB20Q9HC78 741 aaPredicted RBP20.54■□□□□ 0.88
C9orf3-208ENST00000451893 CLEC18AA5D8T8 446 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 FOXO6A8MYZ6 492 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 ALDOAP04075 364 aaKnown RBP20.53■□□□□ 0.88
C9orf3-208ENST00000451893 COL6A2P12110 1019 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 GABRB3P28472 473 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 CRABP2P29373 138 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 IL2P60568 153 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 AP2B1P63010 937 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 ARG2P78540 354 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 SRSF1Q07955 248 aaKnown RBP eCLIP20.53■□□□□ 0.883e-10■■■■□ 21.5
C9orf3-208ENST00000451893 AGTRAPQ6RW13 159 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 PAQR3Q6TCH7 311 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 CLEC18BQ6UXF7 455 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 Q6ZS92 163 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 NDUFAF7Q7L592 441 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 TBC1D19Q8N5T2 526 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 CLEC18CQ8NCF0 446 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 RIC8BQ9NVN3 520 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 SLC17A6Q9P2U8 582 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 MKL2Q9ULH7 1088 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 GRID1Q9ULK0 1009 aa20.53■□□□□ 0.88
C9orf3-208ENST00000451893 MTO1Q9Y2Z2 717 aaKnown RBP20.53■□□□□ 0.88
C9orf3-208ENST00000451893 DYTNA2CJ06 578 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms