RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 GCNT6Q5T4J0 391 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 PDE12Q6L8Q7 609 aaKnown RBP12.9□□□□□ -0.34
USP40-208ENST00000450966 HSDL2Q6YN16 418 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 PRSS48Q7RTY5 328 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 OR52J3Q8NH60 311 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 PCDHB18PQ96TA0 734 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 FAIM2Q9BWQ8 316 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 SLC38A1Q9H2H9 487 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 TPT1P8Q9HAU6 139 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 A0A1W2PPL8 197 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 URADA6NGE7 173 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 PAPSS2O95340 614 aaPredicted RBP12.9□□□□□ -0.34
USP40-208ENST00000450966 LCKP06239 509 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 NR2F1P10589 423 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 MLLT3P42568 568 aaPredicted RBP12.9□□□□□ -0.34
USP40-208ENST00000450966 MAGEA3P43357 314 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 TAS2R41P59536 307 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 DYRK1AQ13627 763 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 GRIN2CQ14957 1233 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 BCL2L15Q5TBC7 163 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 FAM122BQ7Z309 247 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 MTFMTQ96DP5 389 aaKnown RBP12.9□□□□□ -0.34
USP40-208ENST00000450966 POLMQ9NP87 494 aaPredicted RBP12.9□□□□□ -0.34
USP40-208ENST00000450966 DEC1Q9P2X7 70 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 PCDHGB1Q9Y5G3 927 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 SOCS2O14508 198 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 SCAMP1O15126 338 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 ATP4BP51164 291 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 IRF8Q02556 426 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 SNX33Q8WV41 574 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 SLC13A3Q8WWT9 602 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 CNOT9Q92600 299 aaKnown RBP12.9□□□□□ -0.34
USP40-208ENST00000450966 FATE1Q969F0 183 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 KCNC2Q96PR1 638 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 LGMNQ99538 433 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 OR12D3Q9UGF7 316 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 KIF13AQ9H1H9 1805 aa12.9□□□□□ -0.34
USP40-208ENST00000450966 A6NL46 340 aa12.9□□□□□ -0.35
USP40-208ENST00000450966 MCIDASD6RGH6 385 aa12.9□□□□□ -0.35
USP40-208ENST00000450966 EEF1E1O43324 174 aaKnown RBP12.9□□□□□ -0.35
USP40-208ENST00000450966 CNTN5O94779 1100 aa12.9□□□□□ -0.35
USP40-208ENST00000450966 T-ENOLP0DO92 83 aa12.9□□□□□ -0.35
USP40-208ENST00000450966 VEGFCP49767 419 aa12.9□□□□□ -0.35
USP40-208ENST00000450966 GRIK5Q16478 980 aa12.9□□□□□ -0.35
USP40-208ENST00000450966 BEST3Q8N1M1 668 aa12.9□□□□□ -0.35
USP40-208ENST00000450966 GPR156Q8NFN8 814 aa12.9□□□□□ -0.35
USP40-208ENST00000450966 OR1J4Q8NGS1 313 aa12.9□□□□□ -0.35
USP40-208ENST00000450966 ZBTB45Q96K62 511 aaPredicted RBP12.9□□□□□ -0.35
USP40-208ENST00000450966 TVP23BQ9NYZ1 205 aa12.9□□□□□ -0.35
USP40-208ENST00000450966 SCP2D1Q9UJQ7 156 aa12.9□□□□□ -0.35
USP40-208ENST00000450966 HIF3AQ9Y2N7 669 aa12.9□□□□□ -0.35
USP40-208ENST00000450966 H3BUI4 141 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 FAM163BP0C2L3 166 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 EML3Q32P44 896 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 METTL11BQ5VVY1 283 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 OR1M1Q8NGA1 313 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 DDX1Q92499 740 aaKnown RBP12.89□□□□□ -0.35
USP40-208ENST00000450966 RAD51AP1Q96B01 352 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 OR51E2Q9H255 320 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 SIRPGQ9P1W8 387 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 YARS2Q9Y2Z4 477 aaKnown RBP12.89□□□□□ -0.35
USP40-208ENST00000450966 A8MX80 341 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 PCDH17O14917 1159 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 B4GALT4O60513 344 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 TFP02787 698 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 GKN3PP0CG01 181 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 MAGEB1P43366 347 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 GPR1P46091 355 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 SNTB2Q13425 540 aaKnown RBP12.89□□□□□ -0.35
USP40-208ENST00000450966 C21orf62-AS1Q17RA5 79 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 ZNF697Q5TEC3 545 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 TMEM198Q66K66 360 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 MSANTD2Q6P1R3 559 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 KCTD20Q7Z5Y7 419 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 SNX29P2Q8IUI4 249 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 TXNDC5Q8NBS9 432 aaKnown RBP12.89□□□□□ -0.35
USP40-208ENST00000450966 C7orf34Q96L11 122 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 OR51J1Q9H342 316 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 LRTM1Q9HBL6 345 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 TRPS1Q9UHF7 1281 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 UBBP0CG47 229 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 UBCP0CG48 685 aaKnown RBP12.89□□□□□ -0.35
USP40-208ENST00000450966 GABRR2P28476 465 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 MTPNP58546 118 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 RPS27AP62979 156 aaKnown RBP12.89□□□□□ -0.35
USP40-208ENST00000450966 UBA52P62987 128 aaKnown RBP12.89□□□□□ -0.35
USP40-208ENST00000450966 SLC35F1Q5T1Q4 408 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 CLEC6AQ6EIG7 209 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 GDPGP1Q6ZNW5 385 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 WFIKKN2Q8TEU8 576 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 FCAMRQ8WWV6 532 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 KCNN1Q92952 543 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 TMEM248Q9NWD8 314 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 MYO5BQ9ULV0 1848 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 MEN1O00255 615 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 FFAR3O14843 346 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 GPR42O15529 346 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 HIST1H2ABP04908 130 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 FABP1P07148 127 aa12.89□□□□□ -0.35
USP40-208ENST00000450966 IL3P08700 152 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms