RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 LRTM2Q8N967 370 aa2.68□□□□□ -1.98
CLK1-204ENST00000432425 ZPLD1Q8TCW7 415 aa2.68□□□□□ -1.98
CLK1-204ENST00000432425 VMP1Q96GC9 406 aa2.68□□□□□ -1.98
CLK1-204ENST00000432425 RADILQ96JH8 1075 aa2.68□□□□□ -1.98
CLK1-204ENST00000432425 ATF6BQ99941 703 aa2.68□□□□□ -1.98
CLK1-204ENST00000432425 THAP10Q9P2Z0 257 aaPredicted RBP2.68□□□□□ -1.98
CLK1-204ENST00000432425 IL36AQ9UHA7 158 aa2.68□□□□□ -1.98
CLK1-204ENST00000432425 SNX5Q9Y5X3 404 aa2.68□□□□□ -1.98
CLK1-204ENST00000432425 IL16Q14005 1332 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 NPHP3Q7Z494 1330 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 IGLV4-3A0A075B6K6 122 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 IQCMA0A1B0GVH7 501 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 A8MU10 97 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 SHISA9B4DS77 424 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 TRAFD1O14545 582 aaPredicted RBP2.67□□□□□ -1.98
CLK1-204ENST00000432425 NXPH4O95158 308 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 HPP00738 406 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 OR52Z1P0C646 297 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 DNAH10OSP0CZ25 163 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 FOLR2P14207 255 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 MUTP22033 750 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 PSMA3P25788 255 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 DLK1P80370 383 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 MAP2K1Q02750 393 aaPredicted RBP2.67□□□□□ -1.98
CLK1-204ENST00000432425 CALD1Q05682 793 aaKnown RBP2.67□□□□□ -1.98
CLK1-204ENST00000432425 IFT88Q13099 833 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 PRPF4BQ13523 1007 aaKnown RBP2.67□□□□□ -1.98
CLK1-204ENST00000432425 BECN1Q14457 450 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 FAM182AQ5T1J6 154 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 ATP1A1-AS1Q5TC04 95 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 OR4C11Q6IEV9 310 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 RNF130Q86XS8 419 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 MARCH9Q86YJ5 346 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 OR4N5Q8IXE1 308 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 CARNMT1Q8N4J0 409 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 SPSB1Q96BD6 273 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 LRRC3BQ96PB8 259 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 ABCG4Q9H172 646 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 TBK1Q9UHD2 729 aa2.67□□□□□ -1.98
CLK1-204ENST00000432425 SLC7A4O43246 635 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 SLCO2B1O94956 709 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 SERPING1P05155 500 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 TPM2P07951 284 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 ACHEP22303 614 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 CASQ1P31415 396 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 UBASH3AP57075 661 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 HMGN5P82970 282 aaKnown RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 CACNG1Q06432 222 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 ZKSCAN8Q15776 578 aaPredicted RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 RBBP7Q16576 425 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 PTGISQ16647 500 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 HECTD3Q5T447 861 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 MFSD4BQ5TF39 518 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 PRSS55Q6UWB4 352 aaPredicted RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 RBPMS2Q6ZRY4 209 aaKnown RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 MCM10Q7L590 875 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 PLPPR4Q7Z2D5 763 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 ZNF584Q8IVC4 421 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 CCDC60Q8IWA6 550 aaPredicted RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 PHC2Q8IXK0 858 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 ARL6IP6Q8N6S5 226 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 XXYLT1Q8NBI6 393 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 CFAP53Q96M91 514 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 DNAI2Q9GZS0 605 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 RAVER2Q9HCJ3 691 aaKnown RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 MTMR11A4FU01 709 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 SHISA7A6NL88 538 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 TLX2O43763 284 aaPredicted RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 GPRIN2O60269 458 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 GALR3O60755 368 aaPredicted RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 DKC1O60832 514 aaKnown RBP eCLIP2.66□□□□□ -1.98
CLK1-204ENST00000432425 MYBL1P10243 752 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 GP9P14770 177 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 IL11P20809 199 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 CDC25CP30307 473 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 NDST2P52849 883 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 HSD17B7P56937 341 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 OR1D5P58170 312 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 ERVK-16P61578 105 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 FKBP3Q00688 224 aaKnown RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 KIAA0141Q14154 515 aaPredicted RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 DUSP5Q16690 384 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 TMEM266Q2M3C6 531 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 FAM106AQ4KMX7 169 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 LACTB2Q53H82 288 aaPredicted RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 NAA16Q6N069 864 aaPredicted RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 C16orf87Q6PH81 154 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 ENPP7Q6UWV6 458 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 UNC5DQ6UXZ4 953 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 DNAJB7Q7Z6W7 309 aaPredicted RBP2.66□□□□□ -1.98
CLK1-204ENST00000432425 AMIGO1Q86WK6 493 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 CATSPER3Q86XQ3 398 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 ANKRD13CQ8N6S4 541 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 CCDC63Q8NA47 563 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 CCDC191Q8NCU4 936 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 RPLP0P6Q8NHW5 317 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 SEPT1Q8WYJ6 367 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 TAF4BQ92750 862 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 ATP6V1E2Q96A05 226 aa2.66□□□□□ -1.98
CLK1-204ENST00000432425 PYCR2Q96C36 320 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms