RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 SPNS1Q9H2V7 528 aa16.1■□□□□ 0.17
TRIM39-209ENST00000428728 KCNF1Q9H3M0 494 aa16.1■□□□□ 0.17
TRIM39-209ENST00000428728 STMN3Q9NZ72 180 aa16.1■□□□□ 0.17
TRIM39-209ENST00000428728 CORO1CQ9ULV4 474 aaPredicted RBP16.1■□□□□ 0.17
TRIM39-209ENST00000428728 SLC22A7Q9Y694 548 aa16.1■□□□□ 0.17
TRIM39-209ENST00000428728 TEX15Q9BXT5 2789 aa16.1■□□□□ 0.17
TRIM39-209ENST00000428728 A0A1B0GUH1 482 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 UNC5CO95185 931 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 TCP1P17987 556 aaKnown RBP16.09■□□□□ 0.17
TRIM39-209ENST00000428728 SAT1P21673 171 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 MST1P26927 711 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 RHAGQ02094 409 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 MORF4L2Q15014 288 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 HERC3Q15034 1050 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 ZRSR2Q15696 482 aaKnown RBP16.09■□□□□ 0.17
TRIM39-209ENST00000428728 NSDHLQ15738 373 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 DEFB134Q4QY38 66 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 ZNF766Q5HY98 468 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 ANKMY2Q8IV38 441 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 NEIL2Q969S2 332 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 ZNF354BQ96LW1 612 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 IKZF3Q9UKT9 509 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 NOTCH2Q04721 2471 aa16.09■□□□□ 0.17
TRIM39-209ENST00000428728 TRBC2A0A5B9 178 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 NPEPPSL1A6NEC2 478 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 CRYABP02511 175 aaKnown RBP16.08■□□□□ 0.16
TRIM39-209ENST00000428728 ZNF888P0CJ79 500 aaPredicted RBP16.08■□□□□ 0.16
TRIM39-209ENST00000428728 DR1Q01658 176 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 ACTN3Q08043 901 aaPredicted RBP16.08■□□□□ 0.16
TRIM39-209ENST00000428728 RGS1Q08116 209 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 CSHL1Q14406 222 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 EXT1Q16394 746 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 ACER2Q5QJU3 275 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 STEAP4Q687X5 459 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 SBSNQ6UWP8 590 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 TMPRSS11BQ86T26 416 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 CRLF3Q8IUI8 442 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 TBC1D19Q8N5T2 526 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 SLC5A11Q8WWX8 675 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 ATL1Q8WXF7 558 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 OR1F2PQ96R84 312 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 TRIM31Q9BZY9 425 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 LANCL2Q9NS86 450 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 ANKRD10Q9NXR5 420 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 ZFATQ9P243 1243 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 ABI3Q9P2A4 366 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 SEC14L3Q9UDX4 400 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 SH3BGRL2Q9UJC5 107 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 VWA7Q9Y334 891 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 PSAT1Q9Y617 370 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 TEX264Q9Y6I9 313 aa16.08■□□□□ 0.16
TRIM39-209ENST00000428728 TRGV8A0A0C4DH27 118 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 USP27XA6NNY8 438 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 MAN1A2O60476 641 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 GALR3O60755 368 aaPredicted RBP16.07■□□□□ 0.16
TRIM39-209ENST00000428728 FHP07954 510 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 ENO2P09104 434 aaPredicted RBP16.07■□□□□ 0.16
TRIM39-209ENST00000428728 MYBL2P10244 700 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 ZNF37AP17032 561 aaPredicted RBP16.07■□□□□ 0.16
TRIM39-209ENST00000428728 ALOX12P18054 663 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 HNF4AP41235 474 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 ITGA8P53708 1063 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 OR4D2P58180 307 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 PWP1Q13610 501 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 ZNF460Q14592 562 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 USP10Q14694 798 aaKnown RBP16.07■□□□□ 0.16
TRIM39-209ENST00000428728 H3F3CQ6NXT2 135 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 SYDE1Q6ZW31 735 aaPredicted RBP16.07■□□□□ 0.16
TRIM39-209ENST00000428728 AFAP1L2Q8N4X5 818 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 OR4K1Q8NGD4 311 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 TBC1D20Q96BZ9 403 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 SIGLEC12Q96PQ1 595 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 LPAR4Q99677 370 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 NPAS2Q99743 824 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 HES7Q9BYE0 225 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 KLHL1Q9NR64 748 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 DYRK1BQ9Y463 629 aa16.07■□□□□ 0.16
TRIM39-209ENST00000428728 GTF3C1Q12789 2109 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 FAM95CA0A1B0GW59 222 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 ARHGAP10A1A4S6 786 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 CTAGE15A4D2H0 777 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 MAGEB17A8MXT2 336 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 PRSS44E7EML9 344 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 CDC7O00311 574 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 TTI1O43156 1089 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 CHST10O43529 356 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 B4GALT2O60909 372 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 DNAJB6O75190 326 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 JAK1P23458 1154 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 ARL4CP56559 192 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 SKP1P63208 163 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 REEP5Q00765 189 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 TUBA3CQ13748 450 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 FASTKD3Q14CZ7 662 aaKnown RBP16.06■□□□□ 0.16
TRIM39-209ENST00000428728 MEP1AQ16819 746 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 PPP1R3AQ16821 1122 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 TUBA3EQ6PEY2 450 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 TMEM207Q6UWW9 146 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 CTAGE6Q86UF2 777 aa16.06■□□□□ 0.16
TRIM39-209ENST00000428728 PLPP5Q8NEB5 264 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms