RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 DEFA6Q01524 100 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 BLMHQ13867 455 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 HERC3Q15034 1050 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 BATFQ16520 125 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TOR1AIP1Q5JTV8 583 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF571Q7Z3V5 609 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TIGD4Q8IY51 512 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF276Q8N554 614 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 EIF1ADQ8N9N8 165 aaKnown RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 CLEC4CQ8WTT0 213 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 THAP3Q8WTV1 239 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PYDC1Q8WXC3 89 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 IGSF8Q969P0 613 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 NTAN1Q96AB6 310 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 C11orf24Q96F05 449 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 LIN37Q96GY3 246 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PCED1AQ9H1Q7 454 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 SMOC1Q9H4F8 434 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 REEP1Q9H902 201 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 THAP10Q9P2Z0 257 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 RPS6KA6Q9UK32 745 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 GMPPBQ9Y5P6 360 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 MAU2Q9Y6X3 613 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 ITGB4P16144 1822 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 COQ9O75208 318 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 OTCP00480 354 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 LTA4HP09960 611 aaKnown RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 ACPPP15309 386 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PIK3CBP42338 1070 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 GALK2Q01415 458 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 HTR4Q13639 388 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 E2F2Q14209 437 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PRKD1Q15139 912 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 HES3Q5TGS1 186 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 RNF220Q5VTB9 566 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 FAM171BQ6P995 826 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 RBMS3Q6XE24 437 aaKnown RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 Q6ZVL8 140 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 FNDC5Q8NAU1 212 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 SLC13A3Q8WWT9 602 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TCF7L2Q9NQB0 619 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 NECTIN3Q9NQS3 549 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 UCKL1Q9NWZ5 548 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 MARCH5Q9NX47 278 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TAC3Q9UHF0 121 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 GNG8Q9UK08 70 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 ZFR2Q9UPR6 939 aaKnown RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 KAT6AQ92794 2004 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TOR1BO14657 336 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 OIP5O43482 229 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PLIN3O60664 434 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PTGER3P43115 390 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 CHRNA6Q15825 494 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 LRRC38Q5VT99 294 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 C11orf63Q6NUN7 778 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TLDC1Q6P9B6 456 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 ENPP6Q6UWR7 440 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 GFRALQ6UXV0 394 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 ZYG11AQ6WRX3 759 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 KIAA0907Q7Z7F0 614 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TMEM200AQ86VY9 491 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 APCDD1Q8J025 514 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 SMYD1Q8NB12 490 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 BHLHE22Q8NFJ8 381 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 JOSD2Q8TAC2 188 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 C9orf43Q8TAL5 461 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 EPS8L3Q8TE67 593 aaKnown RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 P2RY11Q96G91 374 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 L2HGDHQ9H9P8 463 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PRDM8Q9NQV8 689 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 AP4B1Q9Y6B7 739 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 BAZ2BQ9UIF8 2168 aaKnown RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 IQCMA0A1B0GVH7 501 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 RCCD1A6NED2 376 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 ADAM12O43184 909 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF37AP17032 561 aaPredicted RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 MAGP20916 626 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 ZP2Q05996 745 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 NAB1Q13506 487 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 NSDHLQ15738 373 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 RFX4Q33E94 735 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 KLHDC10Q6PID8 442 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 MREGQ8N565 214 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 TTC9BQ8N6N2 239 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 ADAMTS18Q8TE60 1221 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 CCDC74AQ96AQ1 378 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 LURAP1Q96LR2 239 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 KLF16Q9BXK1 252 aaPredicted RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 NOL11Q9H8H0 719 aaKnown RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 NDUFAF1Q9Y375 327 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 ARFGEF2Q9Y6D5 1785 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 CACNA1SQ13698 1873 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 IRGMA1A4Y4 181 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 IQCF5A8MTL0 148 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 TRIM38O00635 465 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 EDN1P05305 212 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 IRF2P14316 349 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 COX6B1P14854 86 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 ABHD18Q0P651 414 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 MAPK7Q13164 816 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms