RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 MUC3AQ02505 3323 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 LAMA1P25391 3075 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 A0A1W2PR77 199 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 RTCAO00442 366 aaKnown RBP13.19□□□□□ -0.3
PTPRF-202ENST00000372405 HAT1O14929 419 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 ERN1O75460 977 aaKnown RBP13.19□□□□□ -0.3
PTPRF-202ENST00000372405 DCNP07585 359 aaKnown RBP13.19□□□□□ -0.3
PTPRF-202ENST00000372405 NCK1P16333 377 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 HRH2P25021 359 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 CD27P26842 260 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 VHLP40337 213 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 GRIA3P42263 894 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 MC1RQ01726 317 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 CYP4F3Q08477 520 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 GPR18Q14330 331 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 ZNF385BQ569K4 471 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 PRRT3Q5FWE3 981 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 ZFP1Q6P2D0 407 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 CAMKMTQ7Z624 323 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 UBE3DQ7Z6J8 389 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 SPPL2CQ8IUH8 684 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 CLECL1Q8IZS7 167 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 C16orf78Q8WTQ4 265 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 CPPED1Q9BRF8 314 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-202ENST00000372405 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-202ENST00000372405 MCM8Q9UJA3 840 aa13.19□□□□□ -0.3
PTPRF-202ENST00000372405 TRBC2A0A5B9 178 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 K7ESF4 209 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 NDUFS2O75306 463 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 SEMA3DO95025 777 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 EFNA1P20827 205 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-202ENST00000372405 HTR1EP28566 365 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 BSGP35613 385 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 UBE2IP63279 158 aaKnown RBP13.18□□□□□ -0.3
PTPRF-202ENST00000372405 ABATP80404 500 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 SLC14A1Q13336 389 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 C1orf61Q13536 156 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 PRSS53Q2L4Q9 553 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 MUM1Q2TAK8 710 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 FAM71E1Q6IPT2 247 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 ZNF425Q6IV72 752 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 PARGQ86W56 976 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 MMP21Q8N119 569 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 GJD3Q8N144 294 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 NAGSQ8N159 534 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 PQLC1Q8N2U9 271 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 COQ8BQ96D53 544 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 DUS3LQ96G46 650 aaKnown RBP13.18□□□□□ -0.3
PTPRF-202ENST00000372405 RSRC1Q96IZ7 334 aaKnown RBP13.18□□□□□ -0.3
PTPRF-202ENST00000372405 DUSP26Q9BV47 211 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 GSDMCQ9BYG8 508 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 SRMSQ9H3Y6 488 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 RMND5AQ9H871 391 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 TMEM184CQ9NVA4 438 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 RIMS3Q9UJD0 308 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 CACNA1IQ9P0X4 2223 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 TP53BP1Q12888 1972 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-202ENST00000372405 ISM1B1AKI9 464 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 STK25O00506 426 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 PPM1DO15297 605 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 MAP3K13O43283 966 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 KDM1AO60341 852 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 STATHP02808 62 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 SERPINB1P30740 379 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 RPS9P46781 194 aaKnown RBP13.18□□□□□ -0.3
PTPRF-202ENST00000372405 HNRNPFP52597 415 aaKnown RBP13.18□□□□□ -0.3
PTPRF-202ENST00000372405 TAS2R50P59544 299 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 HYAL2Q12891 473 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 PDE7AQ13946 482 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 DUOXA1Q1HG43 343 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 CPTPQ5TA50 214 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 ZNF551Q7Z340 670 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-202ENST00000372405 UBALD2Q8IYN6 164 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 CADM4Q8NFZ8 388 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 OR10A6Q8NH74 314 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 DNAJB8Q8NHS0 232 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 MAFAQ8NHW3 353 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-202ENST00000372405 NELL1Q92832 810 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 MACROD1Q9BQ69 325 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 LRRC61Q9BV99 259 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 SARGQ9BW04 601 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 KAT8Q9H7Z6 458 aaKnown RBP13.18□□□□□ -0.3
PTPRF-202ENST00000372405 MYNNQ9NPC7 610 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 FAM120CQ9NX05 1096 aaKnown RBP13.18□□□□□ -0.3
PTPRF-202ENST00000372405 CPNE7Q9UBL6 633 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 ATP6V1HQ9UI12 483 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 MUTYHQ9UIF7 546 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 LRRC42Q9Y546 428 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 PCDHB3Q9Y5E6 796 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 SNX13Q9Y5W8 968 aa13.18□□□□□ -0.3
PTPRF-202ENST00000372405 TCRBV5S2A0A599 114 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 C4orf51C9J302 202 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 RFXANKO14593 260 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 CASQ2O14958 399 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-202ENST00000372405 NVLO15381 856 aaKnown RBP13.17□□□□□ -0.3
PTPRF-202ENST00000372405 NDUFS4O43181 175 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 CLEC3AO75596 197 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 FURINP09958 794 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 BCKDHBP21953 392 aa13.17□□□□□ -0.3
PTPRF-202ENST00000372405 PEX2P28328 305 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms