RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 DUX4L3P0CJ86 424 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 DUX4L4P0CJ87 422 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 DUX4L5P0CJ88 424 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 DUX4L6P0CJ89 424 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 DUX4L7P0CJ90 424 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 DEFB134Q4QY38 66 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 ZNF789Q5FWF6 425 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 OR4K14Q8NGD5 310 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 RNASE11Q8TAA1 199 aaKnown RBP14.39□□□□□ -0.11
COL17A1-201ENST00000353479 RIT1Q92963 219 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 MRPL39Q9NYK5 338 aaKnown RBP14.39□□□□□ -0.11
COL17A1-201ENST00000353479 IL17CQ9P0M4 197 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 DUX4Q9UBX2 424 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 EI24O14681 340 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 AURKAO14965 403 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 MAGEB3O15480 346 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 HEXBP07686 556 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 CD9P21926 228 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 HNRNPA2B1P22626 353 aaKnown RBP14.38□□□□□ -0.11
COL17A1-201ENST00000353479 ITGB7P26010 798 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 CRB2Q5IJ48 1285 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 CCDC116Q8IYX3 515 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 MR1Q95460 341 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 TPK1Q9H3S4 243 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 KLHL33A6NCF5 533 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 WWP2O00308 870 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 RABIFP47224 123 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 ABRAXAS2Q15018 415 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 PYDC2Q56P42 97 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 FRRS1Q6ZNA5 592 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 KRTCAP2Q8N6L1 136 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 SUN3Q8TAQ9 357 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 RNF31Q96EP0 1072 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 ZBP1Q9H171 429 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 PDE7BQ9NP56 450 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 IL3P08700 152 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 JUPP14923 745 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 HRH2P25021 359 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 OMPP47874 163 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 CLEC12AQ5QGZ9 265 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 NADSYN1Q6IA69 706 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 NRROSQ86YC3 692 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 LGI4Q8N135 537 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 GPR26Q8NDV2 337 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 TSEN15Q8WW01 171 aaKnown RBP14.38□□□□□ -0.11
COL17A1-201ENST00000353479 F2RL3Q96RI0 385 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 C19orf25Q9UFG5 118 aaPredicted RBP14.38□□□□□ -0.11
COL17A1-201ENST00000353479 LINC01553A4QN01 128 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 WASH3PC4AMC7 463 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 SDHDO14521 159 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 PRAMEF12O95522 483 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 ACADLP28330 430 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 HNRNPKP61978 463 aaKnown RBP eCLIP14.38□□□□□ -0.11
COL17A1-201ENST00000353479 ABATP80404 500 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 PPP1R8Q12972 351 aaKnown RBP14.38□□□□□ -0.11
COL17A1-201ENST00000353479 SGCBQ16585 318 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 HSD11B1LQ7Z5J1 315 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 ZNF761Q86XN6 746 aaPredicted RBP14.38□□□□□ -0.11
COL17A1-201ENST00000353479 RAB8BQ92930 207 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 PRTFDC1Q9NRG1 225 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 MYH7BA7E2Y1 1941 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 MYOCOSA0A1B0GUC4 107 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 CAPN14A8MX76 684 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 TLX3O43711 291 aaPredicted RBP14.38□□□□□ -0.11
COL17A1-201ENST00000353479 OR52B6Q8NGF0 335 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 HCAR2Q8TDS4 363 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 AP3S1Q92572 193 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 HEBP1Q9NRV9 189 aa14.38□□□□□ -0.11
COL17A1-201ENST00000353479 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.37□□□□□ -0.11
COL17A1-201ENST00000353479 ANXA8P13928 327 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 CKMT2P17540 419 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 HLA-FP30511 346 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 PLGLB1Q02325 96 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 ABHD18Q0P651 414 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 NXPE4Q6UWF7 544 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 STRADBQ9C0K7 418 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 SERINC1Q9NRX5 453 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 LAMA4Q16363 1823 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 TSC22D2O75157 780 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 KCNC1P48547 511 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 MOGSQ13724 837 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 LPAL2Q16609 132 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 SLC5A9Q2M3M2 681 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 C10orf62Q5T681 223 aaPredicted RBP14.37□□□□□ -0.11
COL17A1-201ENST00000353479 KLHL17Q6TDP4 642 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 PARS2Q7L3T8 475 aaKnown RBP14.37□□□□□ -0.11
COL17A1-201ENST00000353479 ZNF433Q8N7K0 673 aaPredicted RBP14.37□□□□□ -0.11
COL17A1-201ENST00000353479 OR10H4Q8NGA5 316 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 ISG20Q96AZ6 181 aaKnown RBP14.37□□□□□ -0.11
COL17A1-201ENST00000353479 KCNC2Q96PR1 638 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 FAM170BA6NMN3 283 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 H1F0P07305 194 aaKnown RBP14.37□□□□□ -0.11
COL17A1-201ENST00000353479 HOXD9P28356 352 aaPredicted RBP14.37□□□□□ -0.11
COL17A1-201ENST00000353479 SRP54P61011 504 aaKnown RBP14.37□□□□□ -0.11
COL17A1-201ENST00000353479 GSTM4Q03013 218 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 HHEXQ03014 270 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 SLAMF1Q13291 335 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 PHOSPHO1Q8TCT1 267 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 ZDHHC1Q8WTX9 485 aa14.37□□□□□ -0.11
COL17A1-201ENST00000353479 ACTL8Q9H568 366 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms