RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 STARD5Q9NSY2 213 aa11.29□□□□□ -0.6
SNCA-202ENST00000345009 OXSMQ9NWU1 459 aa11.29□□□□□ -0.6
SNCA-202ENST00000345009 COPG2Q9UBF2 871 aa11.29□□□□□ -0.6
SNCA-202ENST00000345009 GPN3Q9UHW5 284 aaPredicted RBP11.29□□□□□ -0.6
SNCA-202ENST00000345009 KCND3Q9UK17 655 aa11.29□□□□□ -0.6
SNCA-202ENST00000345009 PCTPQ9UKL6 214 aa11.29□□□□□ -0.6
SNCA-202ENST00000345009 EMCNQ9ULC0 261 aa11.29□□□□□ -0.6
SNCA-202ENST00000345009 MDC1Q14676 2089 aaKnown RBP11.28□□□□□ -0.6
SNCA-202ENST00000345009 A0A088AWK7 358 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 C21orf140B9A014 251 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 G3V2L1 256 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 DSCR3O14972 297 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 KLK10O43240 276 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 TYROBPO43914 113 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 NRP2O60462 931 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 TRIM13O60858 407 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 CLEC3AO75596 197 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 SERPINA6P08185 405 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 RPS17P08708 135 aaKnown RBP11.28□□□□□ -0.6
SNCA-202ENST00000345009 ZNF28P17035 718 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 ZNF10P21506 573 aaPredicted RBP11.28□□□□□ -0.6
SNCA-202ENST00000345009 EIF2S3P41091 472 aaKnown RBP11.28□□□□□ -0.6
SNCA-202ENST00000345009 AVPR1BP47901 424 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 UCNP55089 124 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 STXBP1P61764 594 aaKnown RBP11.28□□□□□ -0.6
SNCA-202ENST00000345009 CLCQ05315 142 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 LCP2Q13094 533 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 HERC3Q15034 1050 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 LIPMQ5VYY2 423 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 TTC19Q6DKK2 380 aaPredicted RBP11.28□□□□□ -0.6
SNCA-202ENST00000345009 GRHL2Q6ISB3 625 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 CHSY3Q70JA7 882 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 ABHD13Q7L211 337 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 DSELQ8IZU8 1212 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 ZSCAN1Q8NBB4 408 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 ZNF740Q8NDX6 193 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 SRFBP1Q8NEF9 429 aaKnown RBP11.28□□□□□ -0.6
SNCA-202ENST00000345009 ZNF483Q8TF39 744 aaPredicted RBP11.28□□□□□ -0.6
SNCA-202ENST00000345009 CCT6BQ92526 530 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 TM4SF19Q96DZ7 209 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 NAF1Q96HR8 494 aaKnown RBP11.28□□□□□ -0.6
SNCA-202ENST00000345009 RHBGQ9H310 441 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 GPN2Q9H9Y4 310 aaPredicted RBP11.28□□□□□ -0.6
SNCA-202ENST00000345009 ANKHQ9HCJ1 492 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 SEMA4BQ9NPR2 832 aaPredicted RBP11.28□□□□□ -0.6
SNCA-202ENST00000345009 NKIRAS1Q9NYS0 192 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 PADI2Q9Y2J8 665 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 ASB1Q9Y576 335 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 SLC22A7Q9Y694 548 aa11.28□□□□□ -0.6
SNCA-202ENST00000345009 LRRC14BA6NHZ5 514 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 H0YIV9 168 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 H3BMH7 237 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 CRCPO75575 148 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 CAPNS1P04632 268 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 PCNAP12004 261 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 NEFHP12036 1026 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 EPORP19235 508 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 TCN2P20062 427 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 RORAP35398 523 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 STAT5AP42229 794 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 PIK3CBP42338 1070 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 NAGLUP54802 743 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 CDH13P55290 713 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 PKNOX1P55347 436 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 MAGOHP61326 146 aaKnown RBP11.27□□□□□ -0.61
SNCA-202ENST00000345009 IFT88Q13099 833 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 GPS2Q13227 327 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 E2F2Q14209 437 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 CPSF6Q16630 551 aaKnown RBP eCLIP11.27□□□□□ -0.61
SNCA-202ENST00000345009 HKDC1Q2TB90 917 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 LINC01559Q495D7 138 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 NKAIN1Q4KMZ8 207 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 UNC50Q53HI1 259 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 AGBL2Q5U5Z8 902 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 GPRIN3Q6ZVF9 776 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 VN1R4Q7Z5H5 301 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 NUDCD3Q8IVD9 361 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 LAS2Q8IYD9 372 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 L3MBTL4Q8NA19 623 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 PPP1R14CQ8TAE6 165 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 NT5CQ8TCD5 201 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 TRPC4APQ8TEL6 797 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 COL26A1Q96A83 441 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 FAR2Q96K12 515 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 CNDP1Q96KN2 507 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 TMEM237Q96Q45 408 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 CCNL2Q96S94 520 aaPredicted RBP11.27□□□□□ -0.61
SNCA-202ENST00000345009 ZNF382Q96SR6 550 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 TRMOQ9BU70 441 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 ELOVL6Q9H5J4 265 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 EML4Q9HC35 981 aaKnown RBP11.27□□□□□ -0.61
SNCA-202ENST00000345009 NMRK1Q9NWW6 199 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 IFT80Q9P2H3 777 aaPredicted RBP11.27□□□□□ -0.61
SNCA-202ENST00000345009 DHCR7Q9UBM7 475 aaKnown RBP11.27□□□□□ -0.61
SNCA-202ENST00000345009 SNX6Q9UNH7 406 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 RUVBL1Q9Y265 456 aaKnown RBP11.27□□□□□ -0.61
SNCA-202ENST00000345009 RAXQ9Y2V3 346 aa11.27□□□□□ -0.61
SNCA-202ENST00000345009 H0YIG0 161 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 OR7A17O14581 309 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 BIRC5O15392 142 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms