RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 TMEM237Q96Q45 408 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 ERVK-6Q9BXR3 956 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 NT5DC2Q9H857 520 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 NOL11Q9H8H0 719 aaKnown RBP15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 ACSS2Q9NR19 701 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 CDC14AQ9UNH5 594 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 KMT2BQ9UMN6 2715 aaPredicted RBP15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 ANKDD1BA6NHY2 528 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 OR7A17O14581 309 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 NKX2-8O15522 239 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 SPAG7O75391 227 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 PCNAP12004 261 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 IL1RNP18510 177 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 GSTM2P28161 218 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 HNF4AP41235 474 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 AVPR1BP47901 424 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 CCNG1P51959 295 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 PCDH1Q08174 1060 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 FAM53BQ14153 422 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 RBBP7Q16576 425 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 ADNP2Q6IQ32 1131 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 GRHL2Q6ISB3 625 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 ZYG11AQ6WRX3 759 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 PRSS41Q7RTY9 318 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 SLC22A9Q8IVM8 553 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 OR9A4Q8NGU2 314 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 CREB3L4Q8TEY5 395 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 PPP4R1Q8TF05 950 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 ZNF483Q8TF39 744 aaPredicted RBP15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 UBE2E3Q969T4 207 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 FKBP10Q96AY3 582 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 SMC6Q96SB8 1091 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 PRORYQ9H606 182 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 ANKHQ9HCJ1 492 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 SEMA4BQ9NPR2 832 aaPredicted RBP15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 MKS1Q9NXB0 559 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 COPG2Q9UBF2 871 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 TCFL5Q9UL49 500 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 ZNF490Q9ULM2 529 aaPredicted RBP15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 PADI2Q9Y2J8 665 aa15.1■□□□□ 0.01
CCDC28A-201ENST00000332797 G3V2L1 256 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 PRPF4O43172 522 aaKnown RBP eCLIP15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 CNOT3O75175 753 aaKnown RBP15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 CREG1O75629 220 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 ONECUT2O95948 504 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 SERPINA6P08185 405 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 ZNF888P0CJ79 500 aaPredicted RBP15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 TSPAN8P19075 237 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 PRKAA2P54646 552 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 MC1RQ01726 317 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 DSG2Q14126 1118 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 E2F2Q14209 437 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 ERV3-1Q14264 604 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 TOR1AIP1Q5JTV8 583 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 ZNF678Q5SXM1 525 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 ATP1A1-AS1Q5TC04 95 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 LIPJQ5W064 366 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 MRPL14Q6P1L8 145 aaKnown RBP15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 MED27Q6P2C8 311 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 OVCH1Q7RTY7 1134 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 VN1R5Q7Z5H4 357 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 CROCCP2Q86T23 111 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 SYVN1Q86TM6 617 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 MYRIPQ8NFW9 859 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 OR52B6Q8NGF0 335 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 RDH11Q8TC12 318 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 CDK15Q96Q40 435 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 YIPF2Q9BWQ6 316 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 C1QTNF3Q9BXJ4 246 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 FAM117AQ9C073 453 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 SLC6A16Q9GZN6 736 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 ZBTB26Q9HCK0 441 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 CTSFQ9UBX1 484 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 RNF11Q9Y3C5 154 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 PTRH2Q9Y3E5 179 aaKnown RBP15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 SLC22A7Q9Y694 548 aa15.09■□□□□ 0.01
CCDC28A-201ENST00000332797 URADA6NGE7 173 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 SGK494L7N484 410 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 FFAR3O14843 346 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 GPR42O15529 346 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 UGDHO60701 494 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 CLEC3AO75596 197 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 SUPT7LO94864 414 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 KLHL18O94889 574 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 NSA2O95478 260 aaKnown RBP15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 CLDN9O95484 217 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 CD63P08962 238 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 CREB1P16220 341 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 CDH13P55290 713 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 FOXL2P58012 376 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 RAB8AP61006 207 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 STXBP1P61764 594 aaKnown RBP15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 CDC20Q12834 499 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 HYAL2Q12891 473 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 IL10RAQ13651 578 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 HERC3Q15034 1050 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 UNC50Q53HI1 259 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 ABHD13Q7L211 337 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 GPR155Q7Z3F1 870 aa15.08■□□□□ 0.01
CCDC28A-201ENST00000332797 PDSS2Q86YH6 399 aa15.08■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms