RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ENKURQ8TC29 256 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 ULK4Q96C45 1275 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 ZSCAN5AQ9BUG6 496 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 MCUBQ9NWR8 336 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 NUDT4Q9NZJ9 180 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 CDRT1O95170 752 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 ALPPP05187 535 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 NAGAP17050 411 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 ALAS2P22557 587 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 EVI2BP34910 448 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 FEN1P39748 380 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 MAN2A2P49641 1150 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 EIF2B5Q13144 721 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 PDZK1Q5T2W1 519 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 CBLL1Q75N03 491 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 EIF3MQ7L2H7 374 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 RNF130Q86XS8 419 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 LPCAT1Q8NF37 534 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 OR10G2Q8NGC3 310 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 LKAAEAR1Q8TD35 194 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 APIPQ96GX9 242 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 C12orf10Q9HB07 376 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 C3orf14Q9HBI5 128 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 WWOXQ9NZC7 414 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 NLKQ9UBE8 527 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 FAM227AF5H4B4 570 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 PLK4O00444 970 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 CXCL11O14625 94 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 FPGTO14772 594 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 RAMP2O60895 175 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 TSPAN19P0C672 248 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 SRCP12931 536 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 ATF4P18848 351 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 APEX1P27695 318 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 OR1E1P30953 314 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 GPR15P49685 360 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 RORCP51449 518 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 UBE3AQ05086 875 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 EFEMP1Q12805 493 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 QPRTQ15274 297 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 GPR19Q15760 415 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 WDR53Q7Z5U6 358 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 ADAMTSL2Q86TH1 951 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 ZNF683Q8IZ20 524 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 APOLD1Q96LR9 279 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 FERD3LQ96RJ6 166 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 BOCQ9BWV1 1114 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 GALNT9Q9HCQ5 603 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 PRDM5Q9NQX1 630 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 NDRG2Q9UN36 371 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 CMAHPQ9Y471 501 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 TMEM229AB2RXF0 380 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 AP2A2O94973 939 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 ARHGEF15O94989 841 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 TRAPPC2P0DI81 140 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 TRAPPC2BP0DI82 140 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 ASAH1Q13510 395 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 GLYR1Q49A26 553 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 FLYWCH1Q4VC44 716 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 CST9Q5W186 159 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 TMIGD1Q6UXZ0 262 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 LRRC20Q8TCA0 184 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 RPRD1AQ96P16 312 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 ZIC5Q96T25 663 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 RHCGQ9UBD6 479 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 RPS6KA6Q9UK32 745 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 A0A0C4DFX4 3053 aa12.96□□□□□ -0.33
CCDC88C-201ENST00000331194 SLC28A1O00337 649 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 SHOXO15266 292 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 IGFBP1P08833 259 aaPredicted RBP12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 RHOQP17081 205 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 SDC1P18827 310 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 M6PRP20645 277 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 PBX3P40426 434 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 CLDN8P56748 225 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 OLR1P78380 273 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 HNRNPA0Q13151 305 aaKnown RBP12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 EXOC3L2Q2M3D2 409 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 LIPKQ5VXJ0 399 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 C19orf48Q6RUI8 117 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 ZNF367Q7RTV3 350 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 SLC34A3Q8N130 599 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 KLHDC9Q8NEP7 349 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 ATP6V1C2Q8NEY4 427 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 MS4A4AQ96JQ5 239 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 PSKH2Q96QS6 385 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 TRIB3Q96RU7 358 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 CIPCQ9C0C6 399 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 YARS2Q9Y2Z4 477 aaKnown RBP12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 USP34Q70CQ2 3546 aa12.96□□□□□ -0.34
CCDC88C-201ENST00000331194 PCDH17O14917 1159 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 PRAMEF12O95522 483 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 RPS3P23396 243 aaKnown RBP eCLIP12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 CRYBB2P43320 205 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 SERINC3Q13530 473 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 ZNF267Q14586 743 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 LARS2Q15031 903 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 SPDYE7PQ495Y7 208 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 PLET1Q6UQ28 207 aa12.95□□□□□ -0.34
CCDC88C-201ENST00000331194 OR7D4Q8NG98 312 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms