RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 IER3P46695 156 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 OR3A3P47888 321 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 OR3A2P47893 321 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 SLC6A12P48065 614 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 NPBWR1P48145 328 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 CSNK2BP67870 215 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 CYCSP99999 105 aaKnown RBP2.91□□□□□ -1.94
HMGB1-201ENST00000326004 TMEM187Q14656 261 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 TAB1Q15750 504 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 MRGPRG-AS1Q2M3A8 158 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 CEP85LQ5SZL2 805 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.91□□□□□ -1.94
HMGB1-201ENST00000326004 OTOAQ7RTW8 1153 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 HOOK3Q86VS8 718 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 SNX32Q86XE0 403 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 CREBRFQ8IUR6 639 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 GOLGA6L2Q8N9W4 650 aaPredicted RBP2.91□□□□□ -1.94
HMGB1-201ENST00000326004 UXS1Q8NBZ7 420 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 OR4D10Q8NGI6 311 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 SPATA3Q8NHX4 192 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 SGF29Q96ES7 293 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 USP28Q96RU2 1077 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 SYT15Q9BQS2 421 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 NACAP1Q9BZK3 213 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 LSG1Q9H089 658 aaKnown RBP2.91□□□□□ -1.94
HMGB1-201ENST00000326004 PHPT1Q9NRX4 125 aaPredicted RBP2.91□□□□□ -1.94
HMGB1-201ENST00000326004 PDRG1Q9NUG6 133 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 PANK4Q9NVE7 773 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 FBXL4Q9UKA2 621 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 PILRBQ9UKJ0 227 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 PA2G4Q9UQ80 394 aaKnown RBP2.91□□□□□ -1.94
HMGB1-201ENST00000326004 PPP1R3CQ9UQK1 317 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 LIPT1Q9Y234 373 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 ZFP37Q9Y6Q3 630 aaPredicted RBP2.91□□□□□ -1.94
HMGB1-201ENST00000326004 CD109Q6YHK3 1445 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 PBRM1Q86U86 1689 aa2.91□□□□□ -1.94
HMGB1-201ENST00000326004 ABCC2Q92887 1545 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 TRBV4-1A0A0J9YWV2 114 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 MTMR11A4FU01 709 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 SDR42E2A6NKP2 422 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 SLC1A7O00341 560 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 ST8SIA3O43173 380 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 SLC7A4O43246 635 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 CYTIPO60759 359 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF821O75541 412 aaPredicted RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 RAD51DO75771 328 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 CYP2A7P20853 494 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 MUTP22033 750 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 PIK3R1P27986 724 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 CCND3P30281 292 aaPredicted RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 SSTR1P30872 391 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 DUTP33316 252 aaKnown RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 FRKP42685 505 aaPredicted RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 TSFMP43897 325 aaKnown RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 HUNKP57058 714 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 OR1D5P58170 312 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 FOLH1Q04609 750 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 CETN1Q12798 172 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 CDH18Q13634 790 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 PPA1Q15181 289 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 E2F5Q15329 346 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 CDC37Q16543 378 aaPredicted RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 BSPRYQ5W0U4 402 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 KLHL10Q6JEL2 608 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 TRIM65Q6PJ69 517 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 MACC1Q6ZN28 852 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 LINC00696Q6ZRV3 163 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 ANKRD46Q86W74 232 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 SIAH3Q8IW03 269 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF713Q8N859 430 aaPredicted RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF614Q8N883 585 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 AMER3Q8N944 861 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 OR7G3Q8NG95 312 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 OR2T6Q8NHC8 308 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 CHURC1Q8WUH1 139 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 UBLCP1Q8WVY7 318 aaPredicted RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 CKAP2Q8WWK9 683 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 TEKT1Q969V4 418 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 VMP1Q96GC9 406 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 RBM41Q96IZ5 413 aaKnown RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 OPRPNQ99935 248 aaPredicted RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 PIGQQ9BRB3 760 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 ATG101Q9BSB4 218 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 PI4K2AQ9BTU6 479 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 UTP14AQ9BVJ6 771 aaKnown RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 HOXD1Q9GZZ0 328 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 TMEM206Q9H813 350 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 RPF1Q9H9Y2 349 aaKnown RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 HACD3Q9P035 362 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 ERRFI1Q9UJM3 462 aaPredicted RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 NOCTQ9UK39 431 aaKnown RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 EXOGQ9Y2C4 368 aaKnown RBP2.9□□□□□ -1.95
HMGB1-201ENST00000326004 ANGPTL3Q9Y5C1 460 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 CACNA1FO60840 1977 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 LRP5O75197 1615 aa2.9□□□□□ -1.95
HMGB1-201ENST00000326004 A0A1W2PR80 420 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 A4D1N5 150 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 NKX6-3A6NJ46 265 aa2.89□□□□□ -1.95
HMGB1-201ENST00000326004 SLC33A1O00400 549 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-201ENST00000326004 SCO2O43819 266 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms