RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ARPINQ7Z6K5 226 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 MFSD6LQ8IWD5 586 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 SEPT12Q8IYM1 358 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 FBXO36Q8NEA4 188 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 SLC35F5Q8WV83 523 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 C22orf15Q8WYQ4 148 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 BTF3L4Q96K17 158 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ZCCHC3Q9NUD5 404 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 TFCP2L1Q9NZI6 479 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 DDX20Q9UHI6 824 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 EXO1Q9UQ84 846 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 TP53TG5Q9Y2B4 290 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 SNCAIPQ9Y6H5 919 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 CFAP65Q6ZU64 1925 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 TRAPPC13A5PLN9 417 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 K7EQS6 105 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 RETP07949 1114 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 APEHP13798 732 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 GPM6BQ13491 265 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 SLC9A3R2Q15599 337 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 IL23RQ5VWK5 629 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 RANBP10Q6VN20 620 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 G2E3Q7L622 706 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 TRAPPC6BQ86SZ2 158 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ZNF570Q96NI8 536 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 PORCNQ9H237 461 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ZFP14Q9HCL3 533 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 BTG4Q9NY30 223 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ZNF10P21506 573 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 IGFBP5P24593 272 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 HERVK_113P62684 666 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ERVK-9P63128 1117 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ERVK-24P63145 666 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 PSPHP78330 225 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 PFKPQ01813 784 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 DHCR24Q15392 516 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 GPR162Q16538 588 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ACSM2BQ68CK6 577 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 OR2T2Q6IF00 324 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 NAPEPLDQ6IQ20 393 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ZNF783Q6ZMS7 281 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 PXKQ7Z7A4 578 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 CPNE8Q86YQ8 564 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 SLC22A9Q8IVM8 553 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 CRYBG2Q8N1P7 616 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 SIGLECL1Q8N7X8 197 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 MAB21L3Q8N8X9 362 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 CMASQ8NFW8 434 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 DNASE1L2Q92874 299 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 INPP4AQ96PE3 977 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 IL4I1Q96RQ9 567 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 CTRCQ99895 268 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 IL26Q9NPH9 171 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 PAK5Q9P286 719 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 MARCH4Q9P2E8 410 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 EBF1Q9UH73 591 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 SCP2D1Q9UJQ7 156 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ACTL7AQ9Y615 435 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ABCC11Q96J66 1382 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 TEX50A0A1B0GTY4 177 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 A0A1W2PPV4 95 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 DAPL1A0PJW8 107 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 TOR1AO14656 332 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 AKR7A2O43488 359 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 RFPL1O75677 317 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 METTL15P1P0C7V9 234 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 GRIA4P48058 902 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 HMGCS1Q01581 520 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 CAMK2BQ13554 666 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 DRAP1Q14919 205 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ADIPOQQ15848 244 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 C11orf63Q6NUN7 778 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 AADACL2Q6P093 401 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 FAM198BQ6UWH4 519 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 PET117Q6UWS5 81 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 DPY19L3Q6ZPD9 716 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 FBXO15Q8NCQ5 510 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 LNX1Q8TBB1 728 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 DEDD2Q8WXF8 326 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 TVP23CQ96ET8 276 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 GLT1D1Q96MS3 346 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 CRAMP1Q96RY5 1269 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ARHGDIGQ99819 225 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 C14orf93Q9H972 538 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 LANCL2Q9NS86 450 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ADGRE2Q9UHX3 823 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 PCDHGB2Q9Y5G2 931 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ACOX3O15254 700 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 LILRB3O75022 631 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 UGT1A6P19224 532 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 UGT1A4P22310 534 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 UGT1A3P35503 534 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 MAP2K3P46734 347 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 B2MP61769 119 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 CLEC12BQ2HXU8 276 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 CERKLQ49MI3 558 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 PHF19Q5T6S3 580 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 MARCH9Q86YJ5 346 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 PSMG2Q969U7 264 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms