RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FKBPLQ9UIM3 349 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 NOX1Q9Y5S8 564 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 ENPP3O14638 875 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 GLT8D1Q68CQ7 371 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF529Q6P280 563 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 COMMD7Q86VX2 200 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 BIRC7Q96CA5 298 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 CCDC32Q9BV29 185 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 SLA2Q9H6Q3 261 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 SEC61A2Q9H9S3 476 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 ALKBH4Q9NXW9 302 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 SLC15A5A6NIM6 579 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 TSTD3H0UI37 97 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 CDK6Q00534 326 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 SFT2D3Q587I9 215 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 FRG2Q64ET8 278 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 ENDOVQ8N8Q3 282 aaKnown RBP13.47□□□□□ -0.25
CSPG4-201ENST00000308508 JPH3Q8WXH2 748 aaPredicted RBP13.47□□□□□ -0.25
CSPG4-201ENST00000308508 FRG2BQ96QU4 278 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 CITO14578 2027 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 CHRM1P11229 460 aaPredicted RBP13.46□□□□□ -0.25
CSPG4-201ENST00000308508 ANKRD13BQ86YJ7 626 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 FAM86B1Q8N7N1 296 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 SMPDL3BQ92485 455 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 CDK15Q96Q40 435 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 LIN28AQ9H9Z2 209 aaKnown RBP13.46□□□□□ -0.25
CSPG4-201ENST00000308508 ADAP2Q9NPF8 381 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 FAM120CQ9NX05 1096 aaKnown RBP13.46□□□□□ -0.25
CSPG4-201ENST00000308508 OR6C6A6NF89 314 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 CHD1O14646 1710 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 B4GALT5O43286 388 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 ECI2O75521 394 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 SLC6A6P31641 620 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 OR1D2P34982 312 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 NKX6-1P78426 367 aaPredicted RBP13.46□□□□□ -0.25
CSPG4-201ENST00000308508 CREB5Q02930 508 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 DPY19L3Q6ZPD9 716 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 CARM1Q86X55 608 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 KCT2Q8NC54 265 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 OR14C36Q8NHC7 312 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 SLC29A3Q9BZD2 475 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 NANSQ9NR45 359 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 CLCA3PQ9Y6N3 262 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 CCL22O00626 93 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 FAM189A1O60320 539 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 NFATC1O95644 943 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 MT-ND2P03891 347 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 CBSLP0DN79 551 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 CBSP35520 551 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF616Q08AN1 781 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 KANK2Q63ZY3 851 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 TRMT10BQ6PF06 316 aaKnown RBP13.46□□□□□ -0.25
CSPG4-201ENST00000308508 TRUB1Q8WWH5 349 aaKnown RBP13.46□□□□□ -0.25
CSPG4-201ENST00000308508 SLC38A3Q99624 504 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 SSX3Q99909 188 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 DNAJC27Q9NZQ0 273 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 PRKXP51817 358 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 PON2Q15165 354 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 LINGO4Q6UY18 593 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 AMZ2Q86W34 360 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 C12orf40Q86WS4 652 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 TMEM199Q8N511 208 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 PPTC7Q8NI37 304 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 FANK1Q8TC84 345 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 FBXW11Q9UKB1 542 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 RHPN2P1A8MT19 583 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 CH25HO95992 272 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 GLUD1P00367 558 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 ABHD18Q0P651 414 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 CXCL17Q6UXB2 119 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 NIPA2Q8N8Q9 360 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 TCEAL7Q9BRU2 100 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 TRMT61BQ9BVS5 477 aaKnown RBP13.46□□□□□ -0.25
CSPG4-201ENST00000308508 MSRAQ9UJ68 235 aa13.46□□□□□ -0.25
CSPG4-201ENST00000308508 HTRA2O43464 458 aaPredicted RBP13.46□□□□□ -0.26
CSPG4-201ENST00000308508 LYPLA2O95372 231 aa13.46□□□□□ -0.26
CSPG4-201ENST00000308508 TFPTP0C1Z6 253 aa13.46□□□□□ -0.26
CSPG4-201ENST00000308508 TMEM236Q5W0B7 351 aa13.46□□□□□ -0.26
CSPG4-201ENST00000308508 GNPDA2Q8TDQ7 276 aa13.46□□□□□ -0.26
CSPG4-201ENST00000308508 DPCDQ9BVM2 203 aaPredicted RBP13.46□□□□□ -0.26
CSPG4-201ENST00000308508 TSSK6Q9BXA6 273 aa13.46□□□□□ -0.26
CSPG4-201ENST00000308508 PCDHGC4Q9Y5F7 938 aa13.46□□□□□ -0.26
CSPG4-201ENST00000308508 POLR1CO15160 346 aaPredicted RBP13.46□□□□□ -0.26
CSPG4-201ENST00000308508 CREB1P16220 341 aa13.46□□□□□ -0.26
CSPG4-201ENST00000308508 HOXC8P31273 242 aa13.46□□□□□ -0.26
CSPG4-201ENST00000308508 SCML4Q8N228 414 aa13.46□□□□□ -0.26
CSPG4-201ENST00000308508 OR56A1Q8NGH5 318 aa13.46□□□□□ -0.26
CSPG4-201ENST00000308508 OR5AK3PQ8NH89 298 aa13.46□□□□□ -0.26
CSPG4-201ENST00000308508 OR51I1Q9H343 314 aa13.46□□□□□ -0.26
CSPG4-201ENST00000308508 GNRHRP30968 328 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 WDR4P57081 412 aaKnown RBP13.45□□□□□ -0.26
CSPG4-201ENST00000308508 CMTM7Q96FZ5 175 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 FAM163AQ96GL9 167 aaPredicted RBP13.45□□□□□ -0.26
CSPG4-201ENST00000308508 ATG5Q9H1Y0 275 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 SDHAF3Q9NRP4 125 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 PCDHB14Q9Y5E9 798 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 MYH1P12882 1939 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 MYH2Q9UKX2 1941 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 MYH4Q9Y623 1939 aa13.45□□□□□ -0.26
CSPG4-201ENST00000308508 KLHL33A6NCF5 533 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms